Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 3
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g063630.2.1 | Tomato | plastid | 84.23 | 83.91 |
| PGSC0003DMT400048960 | Potato | mitochondrion | 62.31 | 72.65 |
| KRH22167 | Soybean | plastid | 65.0 | 70.42 |
| KRH27165 | Soybean | plastid | 64.23 | 70.17 |
| CDY46787 | Canola | cytosol | 63.85 | 68.88 |
| Bra003015.1-P | Field mustard | cytosol | 63.46 | 68.46 |
| Bra022697.1-P | Field mustard | plastid | 68.46 | 67.42 |
| VIT_19s0014g03740.t01 | Wine grape | nucleus, plastid | 68.08 | 67.05 |
| CDY28793 | Canola | plastid | 67.31 | 66.29 |
| AT5G54110.1 | Thale cress | nucleus, plastid | 65.77 | 64.29 |
| CDY41776 | Canola | plastid | 64.62 | 63.88 |
| PGSC0003DMT400057560 | Potato | nucleus | 64.23 | 62.55 |
| PGSC0003DMT400047310 | Potato | plastid | 60.0 | 58.65 |
Protein Annotations
| EntrezGene:102583795 | Gene3D:2.60.40.10 | MapMan:35.1 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 | InterPro:IPR000535 |
| InterPro:IPR013783 | InterPro:Ig-like_fold | UniProt:M1BNX4 | InterPro:MSP_dom | PFAM:PF00635 | EnsemblPlantsGene:PGSC0003DMG400019246 |
| PGSC:PGSC0003DMG400019246 | EnsemblPlants:PGSC0003DMT400049547 | PFscan:PS50202 | PANTHER:PTHR10809 | PANTHER:PTHR10809:SF58 | InterPro:PapD-like_sf |
| SUPFAM:SSF49354 | UniParc:UPI0002962DE4 | InterPro:VAP | SEG:seg | : | : |
Description
Structural molecule [Source:PGSC_GENE;Acc:PGSC0003DMG400019246]
Coordinates
chr7:-:53747101..53750799
Molecular Weight (calculated)
29089.8 Da
IEP (calculated)
10.037
GRAVY (calculated)
-0.532
Length
260 amino acids
Sequence
(BLAST)
(BLAST)
001: MAIADHHKSH NSDGKLWKLC PLWQSGTSSS SSSTQNLHSQ NHSHQNGVGS NSSRASTSVS SVARSLLPAR RRLRLDPANS LYFPYEPGKQ VKSAVKIKNT
101: SKSYVAFKFQ TTAPKSCYMR PPGGILEPGE SVVATVFKFV EHPENNEKPV DQKSKVKFKI MSLKVKEGVD YVPELFEEQK DQVTIERILR VVFLDPERPS
201: PVLEKLKRQL AEAEAALESR KKPPVETGPK VVGEGLVIDE WVRLSIFAYK SMYLSKFDSC
101: SKSYVAFKFQ TTAPKSCYMR PPGGILEPGE SVVATVFKFV EHPENNEKPV DQKSKVKFKI MSLKVKEGVD YVPELFEEQK DQVTIERILR VVFLDPERPS
201: PVLEKLKRQL AEAEAALESR KKPPVETGPK VVGEGLVIDE WVRLSIFAYK SMYLSKFDSC
001: MPIGDRQNPS VEKKKNLFRL CPFWQRRSTT SSSSTQNPNQ NYRSRHGNRN TDISAVSKPP LTMSSVARSL LPARRRLRLD PSSYLYFPYE PGKQVRSAIK
101: LKNTSKSHTA FKFQTTAPKS CYMRPPGGVL APGESVFATV FKFVEHPENN EKQPLNQKSK VKFKIMSLKV KPGVEYVPEL FDEQKDQVAV EQVLRVIFID
201: ADRPSAALEK LKRQLDEAEA AVEARKKPPP ETGPRVVGEG LVIDEWKERR EKYLARQQVE SVDSLS
101: LKNTSKSHTA FKFQTTAPKS CYMRPPGGVL APGESVFATV FKFVEHPENN EKQPLNQKSK VKFKIMSLKV KPGVEYVPEL FDEQKDQVAV EQVLRVIFID
201: ADRPSAALEK LKRQLDEAEA AVEARKKPPP ETGPRVVGEG LVIDEWKERR EKYLARQQVE SVDSLS
Arabidopsis Description
PVA41Vesicle-associated protein 4-1 [Source:UniProtKB/Swiss-Prot;Acc:Q1ECE0]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.