Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 1
- mitochondrion 1
- nucleus 2
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003015.1-P | Field mustard | cytosol | 78.2 | 86.31 |
| CDY46787 | Canola | cytosol | 77.82 | 85.89 |
| Bra022697.1-P | Field mustard | plastid | 81.2 | 81.82 |
| CDY28793 | Canola | plastid | 80.83 | 81.44 |
| CDY41776 | Canola | plastid | 80.08 | 80.99 |
| KRH27165 | Soybean | plastid | 66.92 | 74.79 |
| KRH22167 | Soybean | plastid | 66.92 | 74.17 |
| VIT_19s0014g03740.t01 | Wine grape | nucleus, plastid | 69.55 | 70.08 |
| Solyc07g063630.2.1 | Tomato | plastid | 68.42 | 69.73 |
| Solyc12g005390.1.1 | Tomato | mitochondrion | 57.52 | 68.92 |
| PGSC0003DMT400048960 | Potato | mitochondrion | 57.14 | 68.16 |
| PGSC0003DMT400049547 | Potato | cytosol, plastid | 64.29 | 65.77 |
| AT4G21450.3 | Thale cress | nucleus | 59.4 | 50.32 |
| AT4G05060.1 | Thale cress | nucleus, plastid | 54.14 | 50.17 |
Protein Annotations
| Gene3D:2.60.40.10 | MapMan:35.1 | EntrezGene:835498 | ProteinID:AED96452.1 | EMBL:AK221411 | ArrayExpress:AT5G54110 |
| EnsemblPlantsGene:AT5G54110 | RefSeq:AT5G54110 | TAIR:AT5G54110 | RefSeq:AT5G54110-TAIR-G | EnsemblPlants:AT5G54110.1 | TAIR:AT5G54110.1 |
| Symbol:ATMAMI | ProteinID:BAA97133.1 | EMBL:BT025794 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0005886 | GO:GO:0006950 |
| GO:GO:0006970 | GO:GO:0008150 | GO:GO:0009628 | GO:GO:0016020 | InterPro:IPR000535 | InterPro:IPR013783 |
| InterPro:Ig-like_fold | InterPro:MSP_dom | RefSeq:NP_568804.1 | PFAM:PF00635 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PFscan:PS50202 |
| PANTHER:PTHR10809 | PANTHER:PTHR10809:SF58 | InterPro:PapD-like_sf | UniProt:Q1ECE0 | SUPFAM:SSF49354 | EMBL:U83655 |
| UniParc:UPI0000162879 | InterPro:VAP | SEG:seg | : | : | : |
Description
PVA41Vesicle-associated protein 4-1 [Source:UniProtKB/Swiss-Prot;Acc:Q1ECE0]
Coordinates
chr5:+:21958059..21960633
Molecular Weight (calculated)
30256.2 Da
IEP (calculated)
10.527
GRAVY (calculated)
-0.767
Length
266 amino acids
Sequence
(BLAST)
(BLAST)
001: MPIGDRQNPS VEKKKNLFRL CPFWQRRSTT SSSSTQNPNQ NYRSRHGNRN TDISAVSKPP LTMSSVARSL LPARRRLRLD PSSYLYFPYE PGKQVRSAIK
101: LKNTSKSHTA FKFQTTAPKS CYMRPPGGVL APGESVFATV FKFVEHPENN EKQPLNQKSK VKFKIMSLKV KPGVEYVPEL FDEQKDQVAV EQVLRVIFID
201: ADRPSAALEK LKRQLDEAEA AVEARKKPPP ETGPRVVGEG LVIDEWKERR EKYLARQQVE SVDSLS
101: LKNTSKSHTA FKFQTTAPKS CYMRPPGGVL APGESVFATV FKFVEHPENN EKQPLNQKSK VKFKIMSLKV KPGVEYVPEL FDEQKDQVAV EQVLRVIFID
201: ADRPSAALEK LKRQLDEAEA AVEARKKPPP ETGPRVVGEG LVIDEWKERR EKYLARQQVE SVDSLS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.