Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003015.1-P | Field mustard | cytosol | 97.1 | 97.1 |
| CDY41776 | Canola | plastid | 87.97 | 80.61 |
| CDY28793 | Canola | plastid | 87.55 | 79.92 |
| AT5G54110.1 | Thale cress | nucleus, plastid | 85.89 | 77.82 |
| KRH27165 | Soybean | plastid | 70.12 | 71.01 |
| KRH22167 | Soybean | plastid | 70.12 | 70.42 |
| Solyc12g005390.1.1 | Tomato | mitochondrion | 63.49 | 68.92 |
| PGSC0003DMT400048960 | Potato | mitochondrion | 63.07 | 68.16 |
| Solyc07g063630.2.1 | Tomato | plastid | 72.61 | 67.05 |
| VIT_19s0014g03740.t01 | Wine grape | nucleus, plastid | 70.54 | 64.39 |
| PGSC0003DMT400049547 | Potato | cytosol, plastid | 68.88 | 63.85 |
| CDY44751 | Canola | nucleus | 56.85 | 56.85 |
| CDX79064 | Canola | nucleus, plastid | 63.9 | 54.23 |
| CDX76427 | Canola | nucleus | 63.07 | 53.9 |
| CDY47093 | Canola | nucleus | 63.07 | 53.33 |
| CDX82825 | Canola | nucleus, plastid | 64.32 | 53.26 |
| CDY71216 | Canola | nucleus, plastid | 56.02 | 48.04 |
Protein Annotations
| Gene3D:2.60.40.10 | MapMan:35.1 | GO:A0A078I9H3 | UniProt:A0A078I9H3 | EnsemblPlants:CDY46787 | ProteinID:CDY46787 |
| ProteinID:CDY46787.1 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 | EnsemblPlantsGene:GSBRNA2T00086216001 | InterPro:IPR000535 | InterPro:IPR013783 |
| InterPro:Ig-like_fold | InterPro:MSP_dom | PFAM:PF00635 | PFscan:PS50202 | PANTHER:PTHR10809 | PANTHER:PTHR10809:SF58 |
| InterPro:PapD-like_sf | SUPFAM:SSF49354 | UniParc:UPI0004EE0E91 | InterPro:VAP | SEG:seg | : |
Description
BnaCnng14560DBnaCnng14560D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I9H3]
Coordinates
chrLK032685:-:163120..165045
Molecular Weight (calculated)
27570.2 Da
IEP (calculated)
10.495
GRAVY (calculated)
-0.649
Length
241 amino acids
Sequence
(BLAST)
(BLAST)
001: MAITDRQNLN AEEKKKLFKL CPFFWQRRTT TASSSKPSFA RSILPARRRL RLDPSSYLYF PYEAGKQVRS AIKLKNTSKS HTAFKFQTTA PKSCYMRPPG
101: GVLAPGESVF ATVFKFVEHP ENNEKHKLNK KSKAKFKIMS LKVKPGVEFV PELFDEQKDQ VIVERVLRVI FLDADRPSAA LEKLKRQLDE AEAEAAVEVR
201: KKPPPETGPR VVGEGLVIDE WKERREKYLA RQQVDSIDSS S
101: GVLAPGESVF ATVFKFVEHP ENNEKHKLNK KSKAKFKIMS LKVKPGVEFV PELFDEQKDQ VIVERVLRVI FLDADRPSAA LEKLKRQLDE AEAEAAVEVR
201: KKPPPETGPR VVGEGLVIDE WKERREKYLA RQQVDSIDSS S
001: MPIGDRQNPS VEKKKNLFRL CPFWQRRSTT SSSSTQNPNQ NYRSRHGNRN TDISAVSKPP LTMSSVARSL LPARRRLRLD PSSYLYFPYE PGKQVRSAIK
101: LKNTSKSHTA FKFQTTAPKS CYMRPPGGVL APGESVFATV FKFVEHPENN EKQPLNQKSK VKFKIMSLKV KPGVEYVPEL FDEQKDQVAV EQVLRVIFID
201: ADRPSAALEK LKRQLDEAEA AVEARKKPPP ETGPRVVGEG LVIDEWKERR EKYLARQQVE SVDSLS
101: LKNTSKSHTA FKFQTTAPKS CYMRPPGGVL APGESVFATV FKFVEHPENN EKQPLNQKSK VKFKIMSLKV KPGVEYVPEL FDEQKDQVAV EQVLRVIFID
201: ADRPSAALEK LKRQLDEAEA AVEARKKPPP ETGPRVVGEG LVIDEWKERR EKYLARQQVE SVDSLS
Arabidopsis Description
PVA41Vesicle-associated protein 4-1 [Source:UniProtKB/Swiss-Prot;Acc:Q1ECE0]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.