Factsheet for PGSC0003DMT400048960

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g005390.1.1	Tomato	mitochondrion	96.86	97.3
KRH27165	Soybean	plastid	70.4	65.97
KRH22167	Soybean	plastid	70.85	65.83
CDY46787	Canola	cytosol	68.16	63.07
VIT_19s0014g03740.t01	Wine grape	nucleus, plastid	74.44	62.88
PGSC0003DMT400049547	Potato	cytosol, plastid	72.65	62.31
Bra003015.1-P	Field mustard	cytosol	67.26	62.24
CDY41776	Canola	plastid	68.61	58.17
Bra022697.1-P	Field mustard	plastid	68.16	57.58
CDY28793	Canola	plastid	68.16	57.58
PGSC0003DMT400057560	Potato	nucleus	68.61	57.3
AT5G54110.1	Thale cress	nucleus, plastid	68.16	57.14
PGSC0003DMT400047310	Potato	plastid	67.26	56.39

Protein Annotations

EntrezGene:102593012	Gene3D:2.60.40.10	MapMan:35.1	ncoils:Coil	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0016020	InterPro:IPR000535
InterPro:IPR013783	InterPro:Ig-like_fold	UniProt:M1BN31	InterPro:MSP_dom	PFAM:PF00635	EnsemblPlantsGene:PGSC0003DMG400019024
PGSC:PGSC0003DMG400019024	EnsemblPlants:PGSC0003DMT400048960	PFscan:PS50202	PANTHER:PTHR10809	PANTHER:PTHR10809:SF58	InterPro:PapD-like_sf
SUPFAM:SSF49354	UniParc:UPI000295B680	InterPro:VAP	RefSeq:XP_006367651.1	SEG:seg	:

Description

Membrane-associated mannitol-induced [Source:PGSC_GENE;Acc:PGSC0003DMG400019024]

Coordinates

chr12:-:7878972..7883966

Molecular Weight (calculated)

25361.6 Da

IEP (calculated)

10.243

GRAVY (calculated)

-0.662

Length

223 amino acids

Sequence
(BLAST)

001: MAAADHRKRQ QSNGKLSWLC PFTKSIFPAK RRLRLDPSNN LYFPYEPGKQ AKSAIKIKNT SKSFVAFKFQ TTAPKSCYMR PPGGILVPGE SLIATVFKFI
101: EQPENNEKPI VDQKTKVKFK IISLKVKEGT DYVPELFDEQ KDKVSIERTL KVVFLDPERP SPALDKLKRQ LAQAETATEA EKKPPVDTGP NVVGEGLIVD
201: EWKERRERYL ARQQVEAVDS VKQ

Best Arabidopsis Sequence Match ( AT4G21450.1 )
(BLAST)

001: MTMTEEKPTS DGKGGWGFFK IPFRNSSGHR NAASSAATSP FPSGASSSST SSHLHNHHQH HHQHHHQHHH QLGYNGPHGD GSGQNQHPTP SPSVSSVAKS
101: FLPTKRRLKL DPSEKLYFPY EPGKQVRSAI KIKNTSKSHV AFKFQTTAPK SCFMRPPGAI LAPGETIIAT VFKFVEPPEN NEKPMDQRSR VKFKIMSLKV
201: KGPMDYVPEL FDEQKDDVSK EQILRVIFLD PERSNPALEK LKRQLAEADA AVEARKKPPE ETGPKMIGEG LVIDEWKERR ERYLAQQQGE GADSV

Arabidopsis Description

PapD-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JJI7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.