Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400047310 | Potato | plastid | 95.51 | 95.86 |
| VIT_12s0057g00200.t01 | Wine grape | nucleus, plastid | 67.79 | 69.88 |
| Solyc12g005390.1.1 | Tomato | mitochondrion | 55.81 | 67.12 |
| KRH56041 | Soybean | nucleus, plastid | 67.04 | 66.05 |
| KRH26895 | Soybean | nucleus | 64.79 | 65.78 |
| Solyc07g063630.2.1 | Tomato | plastid | 62.55 | 63.98 |
| KRH25486 | Soybean | nucleus, plastid | 56.18 | 63.83 |
| Solyc02g079230.2.1 | Tomato | nucleus, plastid | 63.67 | 63.67 |
| KRH22454 | Soybean | nucleus | 62.55 | 63.02 |
Protein Annotations
| Gene3D:2.60.40.10 | MapMan:35.1 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 | InterPro:IPR000535 | InterPro:IPR013783 |
| InterPro:Ig-like_fold | UniProt:K4CG16 | InterPro:MSP_dom | PFAM:PF00635 | PFscan:PS50202 | PANTHER:PTHR10809 |
| PANTHER:PTHR10809:SF48 | InterPro:PapD-like_sf | SUPFAM:SSF49354 | EnsemblPlantsGene:Solyc07g054740.2 | EnsemblPlants:Solyc07g054740.2.1 | UniParc:UPI000276C601 |
| InterPro:VAP | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr7:-:62962413..62967802
Molecular Weight (calculated)
29746.5 Da
IEP (calculated)
9.532
GRAVY (calculated)
-0.493
Length
267 amino acids
Sequence
(BLAST)
(BLAST)
001: MALANEKSVS DGKIWGICKL PFWHSTSSSL AASSSSIASS SSSSFRQQHN GISVDNHSNI HAPLKVSSVA KSLLPTRRKL SLDPQNKLYF PYEPGKQVKS
101: AIRIKNISKN PVAFKFQTTG PKSCYMRPPG GILAPDESLI ATVFKFVEPP DNNDKQIGKK SRVKFKVMSL KVKDDVDYVP ELFDERRDEV AVEQVLGVVF
201: LDAERPCPAL EKLNRQLAEA EAEVEARKRP PEDTGPKIVG EGLVIDEWKE RRERYLARQQ VDGVDLV
101: AIRIKNISKN PVAFKFQTTG PKSCYMRPPG GILAPDESLI ATVFKFVEPP DNNDKQIGKK SRVKFKVMSL KVKDDVDYVP ELFDERRDEV AVEQVLGVVF
201: LDAERPCPAL EKLNRQLAEA EAEVEARKRP PEDTGPKIVG EGLVIDEWKE RRERYLARQQ VDGVDLV
001: MTMTEEKPTS DGKGGWGFFK IPFRNSSGHR NAASSAATSP FPSGASSSST SSHLHNHHQH HHQHHHQHHH QLGYNGPHGD GSGQNQHPTP SPSVSSVAKS
101: FLPTKRRLKL DPSEKLYFPY EPGKQVRSAI KIKNTSKSHV AFKFQTTAPK SCFMRPPGAI LAPGETIIAT VFKFVEPPEN NEKPMDQRSR VKFKIMSLKV
201: KGPMDYVPEL FDEQKDDVSK EQILRVIFLD PERSNPALEK LKRQLAEADA AVEARKKPPE ETGPKMIGEG LVIDEWKERR ERYLAQQQGE GADSV
101: FLPTKRRLKL DPSEKLYFPY EPGKQVRSAI KIKNTSKSHV AFKFQTTAPK SCFMRPPGAI LAPGETIIAT VFKFVEPPEN NEKPMDQRSR VKFKIMSLKV
201: KGPMDYVPEL FDEQKDDVSK EQILRVIFLD PERSNPALEK LKRQLAEADA AVEARKKPPE ETGPKMIGEG LVIDEWKERR ERYLAQQQGE GADSV
Arabidopsis Description
PapD-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JJI7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.