Factsheet for VIT_12s0057g00200.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56041	Soybean	nucleus, plastid	81.85	78.23
KRH25486	Soybean	nucleus, plastid	67.95	74.89
KRH26895	Soybean	nucleus	74.52	73.38
VIT_00s0203g00040.t01	Wine grape	nucleus	73.36	71.97
KRH22454	Soybean	nucleus	72.97	71.32
VIT_19s0014g03740.t01	Wine grape	nucleus, plastid	70.66	69.32
PGSC0003DMT400047310	Potato	plastid	71.04	69.17
Solyc07g054740.2.1	Tomato	plastid	69.88	67.79

Protein Annotations

EntrezGene:100244149	wikigene:100244149	Gene3D:2.60.40.10	MapMan:35.1	EMBL:AM476864	ProteinID:CAN75162
ProteinID:CAN75162.1	ProteinID:CCB51692	ProteinID:CCB51692.1	ncoils:Coil	UniProt:F6HHJ6	EMBL:FN595759
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789
GO:GO:0016020	InterPro:IPR000535	InterPro:IPR013783	InterPro:Ig-like_fold	EntrezGene:LOC100244149	wikigene:LOC100244149
InterPro:MSP_dom	PFAM:PF00635	PFscan:PS50202	PANTHER:PTHR10809	PANTHER:PTHR10809:SF48	InterPro:PapD-like_sf
SUPFAM:SSF49354	UniParc:UPI000198455A	InterPro:VAP	ArrayExpress:VIT_12s0057g00200	EnsemblPlantsGene:VIT_12s0057g00200	EnsemblPlants:VIT_12s0057g00200.t01
unigene:Vvi.21431	RefSeq:XP_002274772	RefSeq:XP_002274772.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr12:+:8860316..8862972

Molecular Weight (calculated)

29358.0 Da

IEP (calculated)

9.313

GRAVY (calculated)

-0.628

Length

259 amino acids

Sequence
(BLAST)

001: MAVDSEKSFS EEKVWSLCKM PFWQSNNASS SSSTSSSLQS VHQQSQSHQV LQSSNAVSFV TKSLLPTRRR LHLDPPNKLY FPYEPGKQVR SAISIKNISR
101: SHLAFKFQTT APKSCYMRPP GGILAPGESL IATVFKFVEH PENNEKPAVD QKSKVKFKIM SLKVKGEMDY VPELFDEQKD QVAEEQILRV VFLDTERPSP
201: PLEKLKRQLA EAEAALEARK KPPEDTGPRI VGEGLVIDEW KERRERYLAR QQVEGIDSV

Best Arabidopsis Sequence Match ( AT4G21450.1 )
(BLAST)

001: MTMTEEKPTS DGKGGWGFFK IPFRNSSGHR NAASSAATSP FPSGASSSST SSHLHNHHQH HHQHHHQHHH QLGYNGPHGD GSGQNQHPTP SPSVSSVAKS
101: FLPTKRRLKL DPSEKLYFPY EPGKQVRSAI KIKNTSKSHV AFKFQTTAPK SCFMRPPGAI LAPGETIIAT VFKFVEPPEN NEKPMDQRSR VKFKIMSLKV
201: KGPMDYVPEL FDEQKDDVSK EQILRVIFLD PERSNPALEK LKRQLAEADA AVEARKKPPE ETGPKMIGEG LVIDEWKERR ERYLAQQQGE GADSV

Arabidopsis Description

PapD-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JJI7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.