CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH25486	Soybean	nucleus, plastid	83.03	95.74
KRH26895	Soybean	nucleus	81.92	84.41
KRH22454	Soybean	nucleus	80.07	81.89
VIT_12s0057g00200.t01	Wine grape	nucleus, plastid	78.23	81.85
KRH22167	Soybean	plastid	64.58	72.92
KRH21581	Soybean	plastid	49.45	72.04
KRH27165	Soybean	plastid	63.1	71.85
PGSC0003DMT400047310	Potato	plastid	66.42	67.67
KRH49936	Soybean	nucleus	67.16	67.66
KRH41939	Soybean	nucleus	66.42	67.16
Solyc07g054740.2.1	Tomato	plastid	66.05	67.04
KRH10748	Soybean	cytosol	59.78	63.28

Protein Annotations

EntrezGene:100820576	Gene3D:2.60.40.10	MapMan:35.1	EMBL:ACUP02004085	EnsemblPlantsGene:GLYMA_06G298500	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0016020
UniProt:I1KF67	InterPro:IPR000535	InterPro:IPR013783	InterPro:Ig-like_fold	EnsemblPlants:KRH56041	ProteinID:KRH56041
ProteinID:KRH56041.1	InterPro:MSP_dom	PFAM:PF00635	PFscan:PS50202	PANTHER:PTHR10809	PANTHER:PTHR10809:SF48
InterPro:PapD-like_sf	SUPFAM:SSF49354	UniParc:UPI000233A600	InterPro:VAP	SEG:seg	:

Description

hypothetical protein

Coordinates

chr6:-:48732478..48735080

Molecular Weight (calculated)

30512.4 Da

IEP (calculated)

9.361

GRAVY (calculated)

-0.590

Length

271 amino acids

Sequence
(BLAST)

001: MAVESDKVGS DGKVWSFCSM PFWQTTHASS SSSSTTTTIP TTSSMHHSVH HQSQILQSLD RSTHQPSTTV SSVAKSLLPT RRRLRLDPPN KLYFPYEPGK
101: QVRSAIAIKN TCKSHVAFKF QTTAPKSCYM RPPGGILAPG ESIIATVFKF VEPPENNEKP IDQKSRVKFK IMSLKVKGEM DYVPELFDEQ RDHVADEQIL
201: RVIFLDPERP SPALDKLKRQ LAEAEAALEA RKKPPEETGP RVAGEGLVID EWKERRERYL ARQQVEVVDS V

Best Arabidopsis Sequence Match ( AT4G21450.1 )
(BLAST)

001: MTMTEEKPTS DGKGGWGFFK IPFRNSSGHR NAASSAATSP FPSGASSSST SSHLHNHHQH HHQHHHQHHH QLGYNGPHGD GSGQNQHPTP SPSVSSVAKS
101: FLPTKRRLKL DPSEKLYFPY EPGKQVRSAI KIKNTSKSHV AFKFQTTAPK SCFMRPPGAI LAPGETIIAT VFKFVEPPEN NEKPMDQRSR VKFKIMSLKV
201: KGPMDYVPEL FDEQKDDVSK EQILRVIFLD PERSNPALEK LKRQLAEADA AVEARKKPPE ETGPKMIGEG LVIDEWKERR ERYLAQQQGE GADSV

Arabidopsis Description

PapD-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JJI7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.