Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 3
- mitochondrion 1
- cytosol 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX70720 | Canola | cytosol, plastid | 85.3 | 86.23 |
| Bra006372.1-P | Field mustard | cytosol, plastid | 84.95 | 85.87 |
| CDX78712 | Canola | cytosol, plastid | 84.95 | 85.87 |
| VIT_16s0039g01850.t01 | Wine grape | cytosol | 63.8 | 64.03 |
| AT5G46860.1 | Thale cress | cytosol | 59.86 | 62.31 |
| GSMUA_Achr7P04850_001 | Banana | cytosol | 60.22 | 61.54 |
| GSMUA_Achr1P15580_001 | Banana | cytosol | 59.5 | 60.81 |
| HORVU3Hr1G035380.1 | Barley | cytosol | 59.86 | 60.29 |
| GSMUA_Achr4P20770_001 | Banana | cytosol | 58.42 | 59.71 |
| TraesCS3D01G180500.1 | Wheat | cytosol | 59.14 | 59.57 |
| TraesCS3A01G175000.1 | Wheat | cytosol | 59.14 | 59.57 |
| EES02705 | Sorghum | cytosol | 58.42 | 58.21 |
| Os01t0254900-01 | Rice | plasma membrane | 57.71 | 57.5 |
| GSMUA_Achr5P04090_001 | Banana | cytosol | 56.63 | 56.63 |
| AT4G17730.2 | Thale cress | cytosol | 51.97 | 55.34 |
| Solyc06g072760.2.1 | Tomato | cytosol | 51.61 | 50.88 |
| Os02t0702800-01 | Rice | cytosol | 48.03 | 50.19 |
| EES05663 | Sorghum | cytosol | 48.03 | 50.0 |
| Zm00001d017756_P001 | Maize | extracellular | 44.09 | 49.6 |
| HORVU6Hr1G041590.1 | Barley | cytosol | 46.95 | 49.25 |
| HORVU6Hr1G068640.1 | Barley | cytosol | 46.59 | 48.87 |
| Zm00001d040286_P003 | Maize | cytosol | 51.61 | 48.16 |
| TraesCS6A01G271000.1 | Wheat | cytosol | 42.65 | 44.24 |
| TraesCS6D01G244100.2 | Wheat | cytosol | 46.24 | 44.18 |
| TraesCS6B01G298100.3 | Wheat | cytosol | 43.01 | 43.32 |
| PGSC0003DMT400069241 | Potato | cytosol | 39.43 | 41.35 |
| Zm00001d008333_P003 | Maize | cytosol | 45.88 | 39.38 |
| Zm00001d039536_P001 | Maize | cytosol | 32.97 | 34.98 |
| AT1G32270.1 | Thale cress | nucleus | 42.29 | 28.37 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.70 | MapMan:22.7.1.2 | EntrezGene:831546 | UniProt:A0A178UQL2 | ProteinID:AED92345.1 |
| EMBL:AF411797 | ArrayExpress:AT5G16830 | EnsemblPlantsGene:AT5G16830 | RefSeq:AT5G16830 | TAIR:AT5G16830 | RefSeq:AT5G16830-TAIR-G |
| EnsemblPlants:AT5G16830.1 | TAIR:AT5G16830.1 | EMBL:AY088599 | Unigene:At.1639 | EMBL:BT025036 | ProteinID:CAC01847.1 |
| GO:GO:0000149 | GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005768 | GO:GO:0005770 | GO:GO:0005794 |
| GO:GO:0006623 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0006896 | GO:GO:0006906 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016192 |
| GO:GO:0030140 | GO:GO:0031201 | GO:GO:0031902 | GO:GO:0045324 | GO:GO:0048278 | GO:GO:0061025 |
| InterPro:IPR000727 | EMBL:L41651 | RefSeq:NP_197185.1 | ProteinID:OAO95770.1 | PFAM:PF05739 | PFAM:PF14523 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 |
| PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | ScanProsite:PS00914 | PFscan:PS50192 |
| PANTHER:PTHR19957 | PANTHER:PTHR19957:SF138 | UniProt:Q1WW70 | UniProt:Q39233 | SMART:SM00397 | SMART:SM00503 |
| InterPro:SNARE | SUPFAM:SSF47661 | Symbol:SYP21 | InterPro:Syntaxin/epimorphin_CS | InterPro:Syntaxin_N | TMHMM:TMhelix |
| InterPro:T_SNARE_dom | UniParc:UPI00001362DC | SEG:seg | : | : | : |
Description
SYP21Syntaxin-21 [Source:UniProtKB/Swiss-Prot;Acc:Q39233]
Coordinates
chr5:-:5532846..5535295
Molecular Weight (calculated)
31063.2 Da
IEP (calculated)
7.611
GRAVY (calculated)
-0.284
Length
279 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFQDLEAGT RSPAPNRFTG GRQQRPSSRG DPSQEVAAGI FRISTAVNSF FRLVNSIGTP KDTLELRDKL QKTRLQISEL VKNTSAKLKE ASEADLHGSA
101: SQIKKIADAK LAKDFQSVLK EFQKAQRLAA EREITYTPVV TKEIPTSYNA PELDTESLRI SQQQALLLQS RRQEVVFLDN EITFNEAIIE EREQGIREIE
201: DQIRDVNGMF KDLALMVNHQ GNIVDDISSN LDNSHAATTQ ATVQLRKAAK TQRSNSSLTC LLILIFGIVL LIVIIVVLV
101: SQIKKIADAK LAKDFQSVLK EFQKAQRLAA EREITYTPVV TKEIPTSYNA PELDTESLRI SQQQALLLQS RRQEVVFLDN EITFNEAIIE EREQGIREIE
201: DQIRDVNGMF KDLALMVNHQ GNIVDDISSN LDNSHAATTQ ATVQLRKAAK TQRSNSSLTC LLILIFGIVL LIVIIVVLV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.