Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78796 | Canola | cytosol | 85.11 | 80.8 |
| Bra040178.1-P | Field mustard | cytosol | 84.35 | 80.07 |
| CDY60786 | Canola | cytosol | 82.44 | 79.12 |
| CDY01478 | Canola | cytosol | 79.77 | 75.45 |
| AT5G46860.1 | Thale cress | cytosol | 76.34 | 74.63 |
| Bra012645.1-P | Field mustard | cytosol | 78.63 | 74.1 |
| CDX90452 | Canola | cytosol | 78.63 | 74.1 |
| PGSC0003DMT400084469 | Potato | cytosol, golgi, mitochondrion, nucleus | 17.56 | 73.02 |
| Solyc08g076540.2.1 | Tomato | nucleus | 72.52 | 69.6 |
| PGSC0003DMT400043211 | Potato | cytosol | 72.14 | 69.23 |
| PGSC0003DMT400038357 | Potato | cytosol | 72.14 | 69.23 |
| KRH07229 | Soybean | endoplasmic reticulum | 72.14 | 69.23 |
| VIT_02s0012g01850.t01 | Wine grape | cytosol | 72.14 | 68.98 |
| Solyc06g062360.2.1 | Tomato | cytosol | 71.37 | 68.5 |
| KRH07476 | Soybean | cytosol | 71.37 | 68.5 |
| Solyc11g066910.1.1 | Tomato | plastid | 70.99 | 68.13 |
| KRH74378 | Soybean | cytosol | 70.61 | 67.77 |
| KRH39570 | Soybean | cytosol | 70.23 | 67.4 |
| Solyc08g005200.2.1 | Tomato | cytosol | 69.85 | 67.03 |
| GSMUA_Achr7P04850_001 | Banana | cytosol | 66.41 | 63.74 |
| Os01t0254900-01 | Rice | plasma membrane | 65.65 | 61.43 |
| PGSC0003DMT400068230 | Potato | cytosol | 70.61 | 61.06 |
| TraesCS3A01G175000.1 | Wheat | cytosol | 64.5 | 61.01 |
| TraesCS3D01G180500.1 | Wheat | cytosol | 64.12 | 60.65 |
| GSMUA_Achr5P04090_001 | Banana | cytosol | 64.5 | 60.57 |
| HORVU3Hr1G035380.1 | Barley | cytosol | 63.74 | 60.29 |
| GSMUA_Achr1P15580_001 | Banana | cytosol | 61.83 | 59.34 |
| EES02705 | Sorghum | cytosol | 63.36 | 59.29 |
| GSMUA_Achr4P20770_001 | Banana | cytosol | 61.45 | 58.97 |
| Zm00001d040286_P003 | Maize | cytosol | 63.36 | 55.52 |
| AT5G16830.1 | Thale cress | cytosol, plastid | 55.34 | 51.97 |
| Os02t0702800-01 | Rice | cytosol | 49.62 | 48.69 |
| HORVU6Hr1G068640.1 | Barley | cytosol | 48.47 | 47.74 |
| HORVU6Hr1G041590.1 | Barley | cytosol | 48.47 | 47.74 |
| TraesCS6A01G271000.1 | Wheat | cytosol | 46.95 | 45.72 |
| PGSC0003DMT400045973 | Potato | cytosol | 23.28 | 45.52 |
| EES05663 | Sorghum | cytosol | 45.04 | 44.03 |
| TraesCS6B01G298100.3 | Wheat | cytosol | 46.18 | 43.68 |
| Zm00001d017756_P001 | Maize | extracellular | 41.22 | 43.55 |
| TraesCS6D01G244100.2 | Wheat | cytosol | 47.71 | 42.81 |
| Zm00001d008333_P003 | Maize | cytosol | 52.67 | 42.46 |
| Zm00001d039536_P001 | Maize | cytosol | 39.69 | 39.54 |
| AT1G32270.1 | Thale cress | nucleus | 50.76 | 31.97 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.70 | MapMan:22.7.1.2 | EntrezGene:827494 | UniProt:A8MS65 | ProteinID:AEE83942.1 |
| EMBL:AK316791 | ArrayExpress:AT4G17730 | EnsemblPlantsGene:AT4G17730 | RefSeq:AT4G17730 | TAIR:AT4G17730 | RefSeq:AT4G17730-TAIR-G |
| EnsemblPlants:AT4G17730.2 | TAIR:AT4G17730.2 | Unigene:At.4498 | GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 |
| GO:GO:0005774 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016192 | GO:GO:0061025 | InterPro:IPR000727 | RefSeq:NP_001078403.1 |
| PFAM:PF00804 | PFAM:PF14523 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| ScanProsite:PS00914 | PFscan:PS50192 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF138 | SMART:SM00397 | SMART:SM00503 |
| InterPro:SNARE | SUPFAM:SSF47661 | Symbol:SYP23 | InterPro:Syntaxin/epimorphin_CS | InterPro:Syntaxin_N | InterPro:T_SNARE_dom |
| UniParc:UPI000150557B | SEG:seg | : | : | : | : |
Description
SYP23AT4G17730 protein [Source:UniProtKB/TrEMBL;Acc:A8MS65]
Coordinates
chr4:+:9865103..9867022
Molecular Weight (calculated)
29293.6 Da
IEP (calculated)
6.925
GRAVY (calculated)
-0.614
Length
262 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFQDLEAGR GRSLASSRNI NGGGSRQDTT QDVASGIFQI NTSVSTFHRL VNTLGTPKDT PELREKLHKT RLYIGQLVKD TSAKLKEASE TDHQRGVNQK
101: KKIVDAKLAK DFQAVLKEFQ KAQRLAAERE TVYAPLVHKP SLPSSYTSSE IDVNGDKHPE QRALLVESKR QELVLLDNEI AFNEAVIEER EQGIQEIQQQ
201: IGEVHEIFKD LAVLVHDQGN MIDDIGTHID NSYAATAQGK SHLVRHQRHK DQILLCLISP SS
101: KKIVDAKLAK DFQAVLKEFQ KAQRLAAERE TVYAPLVHKP SLPSSYTSSE IDVNGDKHPE QRALLVESKR QELVLLDNEI AFNEAVIEER EQGIQEIQQQ
201: IGEVHEIFKD LAVLVHDQGN MIDDIGTHID NSYAATAQGK SHLVRHQRHK DQILLCLISP SS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.