CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra012645.1-P	Field mustard	cytosol	98.92	98.92
CDY01478	Canola	cytosol	89.93	90.25
CDX78796	Canola	cytosol	82.37	82.97
CDY60786	Canola	cytosol	79.86	81.32
AT4G17730.2	Thale cress	cytosol	74.1	78.63
CDY33485	Canola	cytosol	74.1	76.3
CDX77702	Canola	cytosol	74.1	76.01
CDY43620	Canola	cytosol	72.66	75.66
CDY37158	Canola	cytosol	72.3	75.28
CDY01290	Canola	cytosol	71.94	74.35
CDX93845	Canola	cytosol	69.06	73.0
KRH07229	Soybean	endoplasmic reticulum	71.58	72.89
KRH74378	Soybean	cytosol	71.22	72.53
KRH39570	Soybean	cytosol	70.86	72.16
KRH07476	Soybean	cytosol	70.86	72.16
TraesCS3A01G175000.1	Wheat	cytosol	68.7	68.95
GSMUA_Achr5P04090_001	Banana	cytosol	68.7	68.46
TraesCS3D01G180500.1	Wheat	cytosol	67.99	68.23
HORVU3Hr1G035380.1	Barley	cytosol	67.63	67.87
GSMUA_Achr7P04850_001	Banana	cytosol	66.55	67.77
EES02705	Sorghum	cytosol	67.27	66.79
Os01t0254900-01	Rice	plasma membrane	66.91	66.43
CDX70720	Canola	cytosol, plastid	64.03	64.49
GSMUA_Achr4P20770_001	Banana	cytosol	63.31	64.47
GSMUA_Achr1P15580_001	Banana	cytosol	63.31	64.47
CDX78712	Canola	cytosol, plastid	63.67	64.13
CDY38084	Canola	cytosol	45.32	63.96
CDY16976	Canola	cytosol, plastid	62.59	63.04
CDX69417	Canola	cytosol, plastid	61.87	61.65
Zm00001d040286_P003	Maize	cytosol	59.71	55.52
Os02t0702800-01	Rice	cytosol	52.88	55.06
HORVU6Hr1G068640.1	Barley	cytosol	52.16	54.51
HORVU6Hr1G041590.1	Barley	cytosol	52.16	54.51
Zm00001d017756_P001	Maize	extracellular	45.68	51.21
EES05663	Sorghum	cytosol	48.56	50.37
TraesCS6D01G244100.2	Wheat	cytosol	51.44	48.97
TraesCS6A01G271000.1	Wheat	cytosol	46.76	48.33
TraesCS6B01G298100.3	Wheat	cytosol	47.48	47.65
Zm00001d008333_P003	Maize	cytosol	51.8	44.31
Zm00001d039536_P001	Maize	cytosol	37.41	39.54
CDY03181	Canola	cytosol	27.34	29.12

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.70	MapMan:22.7.1.2	GO:A0A078DN58	EnsemblPlants:CDX90452	ProteinID:CDX90452
ProteinID:CDX90452.1	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043
GO:GO:0016192	GO:GO:0061025	EnsemblPlantsGene:GSBRNA2T00151063001	InterPro:IPR000727	PFAM:PF05739	PFAM:PF14523
ScanProsite:PS00914	PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF138	SMART:SM00397	SMART:SM00503
InterPro:SNARE	SUPFAM:SSF47661	InterPro:Syntaxin/epimorphin_CS	InterPro:Syntaxin_N	TMHMM:TMhelix	InterPro:T_SNARE_dom
UniParc:UPI0004EEDD07	SEG:seg	:	:	:	:

Description

BnaA03g43290D

Coordinates

chrLK031863:-:303779..305524

Molecular Weight (calculated)

30671.5 Da

IEP (calculated)

6.429

GRAVY (calculated)

-0.300

Length

278 amino acids

Sequence
(BLAST)

001: MSFQDLEAGR GGRRLASSSN TNGGGGRQDT TQAVASGVFE INTAVSSFHR LVNTLGTPKD TPELRDKLHK TRLHIGELVK DTSVKLKEAS ETDHQRGVDQ
101: RKKIVDAKLA KDFQSVLKEF QKAQRLAAER ETVYAPLFTI SSPSSSFASS EIDVSGDKHQ EQRALLVESK RQELVLLDNE IVFNEAIIEE REQGIQEIQQ
201: QIGEVHEIFK DLAVLVHDQG TMIDDIGTHI DNSQAATAQG RSHLAKASKT QRSSSTLMCW LMVIFGIVLL IVIIVLAV

Best Arabidopsis Sequence Match ( AT1G32270.2 )
(BLAST)

001: MVRSNDVKFQ VYDAELTHFD LESNNNLQYS LSLNLSIRNS KSSIGIHYDR FEATVYYMNQ RLGAVPMPLF YLGSKNTMLL RALFEGQTLV LLKGNERKKF
101: EDDQKTGVYR IDVKLSINFR VMVLHLVTWP MKPVVRCHLK IPLALGSSNS TGGHKKMLLI GQLVKDTSAN LREASETDHR RDVAQSKKIA DAKLAKDFEA
201: ALKEFQKAQH ITVERETSYI PFDPKGSFSS SEVDIGYDRS QEQRVLMESR RQEIVLLDNE ISLNEARIEA REQGIQEVKH QISEVMEMFK DLAVMVDHQG
301: TIDDIDEKID NLRSAAAQGK SHLVKASNTQ GSNSSLMCLC WK

Arabidopsis Description

SYP24Putative syntaxin-24 [Source:UniProtKB/Swiss-Prot;Acc:Q9C615]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.