CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
mitochondrion 1
cytosol 2
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008592.1-P	Field mustard	cytosol, plastid	97.85	97.85
CDY16976	Canola	cytosol, plastid	92.83	93.84
CDX70720	Canola	cytosol, plastid	89.25	90.22
CDX78712	Canola	cytosol, plastid	88.89	89.86
CDY38084	Canola	cytosol	59.5	84.26
CDY37158	Canola	cytosol	62.72	65.54
VIT_16s0039g01850.t01	Wine grape	cytosol	65.23	65.47
CDX78796	Canola	cytosol	64.52	65.22
CDY43620	Canola	cytosol	62.01	64.79
CDY33485	Canola	cytosol	62.37	64.44
CDY01478	Canola	cytosol	63.8	64.26
CDX77702	Canola	cytosol	62.37	64.21
CDY60786	Canola	cytosol	61.65	63.0
GSMUA_Achr7P04850_001	Banana	cytosol	61.29	62.64
CDX93845	Canola	cytosol	58.42	61.98
GSMUA_Achr1P15580_001	Banana	cytosol	60.57	61.9
CDX90452	Canola	cytosol	61.65	61.87
CDY01290	Canola	cytosol	59.5	61.71
TraesCS3D01G180500.1	Wheat	cytosol	60.57	61.01
GSMUA_Achr4P20770_001	Banana	cytosol	59.5	60.81
TraesCS3A01G175000.1	Wheat	cytosol	60.22	60.65
HORVU3Hr1G035380.1	Barley	cytosol	59.86	60.29
GSMUA_Achr5P04090_001	Banana	cytosol	59.86	59.86
EES02705	Sorghum	cytosol	59.5	59.29
Os01t0254900-01	Rice	plasma membrane	58.78	58.57
Solyc06g072760.2.1	Tomato	cytosol	53.41	52.65
Os02t0702800-01	Rice	cytosol	48.75	50.94
EES05663	Sorghum	cytosol	48.03	50.0
HORVU6Hr1G068640.1	Barley	cytosol	46.95	49.25
HORVU6Hr1G041590.1	Barley	cytosol	46.95	49.25
Zm00001d040286_P003	Maize	cytosol	52.69	49.16
Zm00001d017756_P001	Maize	extracellular	42.29	47.58
TraesCS6A01G271000.1	Wheat	cytosol	43.73	45.35
TraesCS6D01G244100.2	Wheat	cytosol	46.59	44.52
TraesCS6B01G298100.3	Wheat	cytosol	43.73	44.04
PGSC0003DMT400069241	Potato	cytosol	41.22	43.23
Zm00001d008333_P003	Maize	cytosol	46.95	40.31
Zm00001d039536_P001	Maize	cytosol	34.41	36.5
CDY03181	Canola	cytosol	25.45	27.2

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.70	MapMan:22.7.1.2	GO:A0A078BYJ7	EnsemblPlants:CDX69417	ProteinID:CDX69417
ProteinID:CDX69417.1	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043
GO:GO:0016192	GO:GO:0061025	EnsemblPlantsGene:GSBRNA2T00135386001	InterPro:IPR000727	PFAM:PF05739	PFAM:PF14523
ScanProsite:PS00914	PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF138	SMART:SM00397	SMART:SM00503
InterPro:SNARE	SUPFAM:SSF47661	InterPro:Syntaxin/epimorphin_CS	InterPro:Syntaxin_N	TMHMM:TMhelix	InterPro:T_SNARE_dom
UniParc:UPI0004EDE345	SEG:seg	:	:	:	:

Description

BnaA10g17660D

Coordinates

chrLK031790:+:126600..128830

Molecular Weight (calculated)

31122.2 Da

IEP (calculated)

5.090

GRAVY (calculated)

-0.229

Length

279 amino acids

Sequence
(BLAST)

001: MSFQDIEAGS RFQTPNRFNS GRQQKPLSRG DPSQEVAAGI FRISTAVNSF FRLVNSIGTA KDTLELREKL QKTRLQISEL VKNTSAKLKE ASEVDLHGAA
101: SPLKKIADAK LAKDFQSVLK EFQKAQRLAA EREITYTPVV TQDMPTSYDA QELDIESLRT SQEQTLLLQS KRQEVVFLDN EITFNEAIIE EREQGIREIQ
201: EQIGEVNEIF KDLAVLVNDQ GVMIDDISSN IDNSHAATSQ ATAQLRKASK TQRANSSLTC LLILIFGIVI LIVIIVVLV

Best Arabidopsis Sequence Match ( AT5G16830.1 )
(BLAST)

001: MSFQDLEAGT RSPAPNRFTG GRQQRPSSRG DPSQEVAAGI FRISTAVNSF FRLVNSIGTP KDTLELRDKL QKTRLQISEL VKNTSAKLKE ASEADLHGSA
101: SQIKKIADAK LAKDFQSVLK EFQKAQRLAA EREITYTPVV TKEIPTSYNA PELDTESLRI SQQQALLLQS RRQEVVFLDN EITFNEAIIE EREQGIREIE
201: DQIRDVNGMF KDLALMVNHQ GNIVDDISSN LDNSHAATTQ ATVQLRKAAK TQRSNSSLTC LLILIFGIVL LIVIIVVLV

Arabidopsis Description

SYP21Syntaxin-21 [Source:UniProtKB/Swiss-Prot;Acc:Q39233]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.