Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra023256.1-P | Field mustard | cytosol | 96.2 | 96.2 |
| CDY01290 | Canola | cytosol | 95.06 | 92.94 |
| KRH07476 | Soybean | cytosol | 77.19 | 74.36 |
| KRH07229 | Soybean | endoplasmic reticulum | 76.81 | 73.99 |
| KRH74378 | Soybean | cytosol | 76.05 | 73.26 |
| CDY43620 | Canola | cytosol | 73.0 | 71.91 |
| CDY33485 | Canola | cytosol | 73.76 | 71.85 |
| KRH39570 | Soybean | cytosol | 74.52 | 71.79 |
| CDY37158 | Canola | cytosol | 72.62 | 71.54 |
| CDX77702 | Canola | cytosol | 73.38 | 71.22 |
| CDY01478 | Canola | cytosol | 73.38 | 69.68 |
| CDX78796 | Canola | cytosol | 73.0 | 69.57 |
| CDX90452 | Canola | cytosol | 73.0 | 69.06 |
| CDY60786 | Canola | cytosol | 69.58 | 67.03 |
| Os01t0254900-01 | Rice | plasma membrane | 71.1 | 66.79 |
| EES02705 | Sorghum | cytosol | 70.34 | 66.07 |
| GSMUA_Achr5P04090_001 | Banana | cytosol | 69.96 | 65.95 |
| HORVU3Hr1G035380.1 | Barley | cytosol | 69.2 | 65.7 |
| TraesCS3A01G175000.1 | Wheat | cytosol | 68.82 | 65.34 |
| TraesCS3D01G180500.1 | Wheat | cytosol | 68.82 | 65.34 |
| GSMUA_Achr7P04850_001 | Banana | cytosol | 67.3 | 64.84 |
| GSMUA_Achr1P15580_001 | Banana | cytosol | 64.64 | 62.27 |
| GSMUA_Achr4P20770_001 | Banana | cytosol | 64.26 | 61.9 |
| CDX78712 | Canola | cytosol, plastid | 63.5 | 60.51 |
| CDX70720 | Canola | cytosol, plastid | 62.74 | 59.78 |
| CDY16976 | Canola | cytosol, plastid | 62.74 | 59.78 |
| CDY38084 | Canola | cytosol | 44.49 | 59.39 |
| CDX69417 | Canola | cytosol, plastid | 61.98 | 58.42 |
| Zm00001d040286_P003 | Maize | cytosol | 61.98 | 54.52 |
| EES05663 | Sorghum | cytosol | 51.71 | 50.75 |
| Zm00001d017756_P001 | Maize | extracellular | 47.15 | 50.0 |
| Os02t0702800-01 | Rice | cytosol | 50.19 | 49.44 |
| HORVU6Hr1G068640.1 | Barley | cytosol | 48.29 | 47.74 |
| HORVU6Hr1G041590.1 | Barley | cytosol | 48.29 | 47.74 |
| TraesCS6D01G244100.2 | Wheat | cytosol | 49.43 | 44.52 |
| Zm00001d008333_P003 | Maize | cytosol | 54.37 | 44.0 |
| TraesCS6A01G271000.1 | Wheat | cytosol | 44.87 | 43.87 |
| TraesCS6B01G298100.3 | Wheat | cytosol | 45.63 | 43.32 |
| Zm00001d039536_P001 | Maize | cytosol | 39.54 | 39.54 |
| AT1G32270.1 | Thale cress | nucleus | 58.17 | 36.78 |
| CDY03181 | Canola | cytosol | 32.32 | 32.57 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.70 | MapMan:22.7.1.2 | GO:A0A078DX18 | EnsemblPlants:CDX93845 | ProteinID:CDX93845 |
| ProteinID:CDX93845.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016043 | GO:GO:0016192 | GO:GO:0061025 | EnsemblPlantsGene:GSBRNA2T00156638001 | InterPro:IPR000727 | PFAM:PF05739 |
| PFAM:PF14523 | ScanProsite:PS00914 | PFscan:PS50192 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF138 | SMART:SM00397 |
| SMART:SM00503 | InterPro:SNARE | SUPFAM:SSF47661 | InterPro:Syntaxin/epimorphin_CS | InterPro:Syntaxin_N | TMHMM:TMhelix |
| InterPro:T_SNARE_dom | UniParc:UPI0004EE4DE4 | SEG:seg | : | : | : |
Description
BnaA09g24450D
Coordinates
chrLK031877:-:1429537..1431336
Molecular Weight (calculated)
29394.2 Da
IEP (calculated)
6.870
GRAVY (calculated)
-0.345
Length
263 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFQDLEAGR KLIKGNKEGG TQAVASGIFE INTAVSTFQR LVNTLGTPKD TLDLRHKLHK TRLHIGQLVK DTSARLKEAS ETDHHRDVSQ SKKIADAKLA
101: KDFEAVLKEF QKAQRVAADR ETSYTPFHPK SDLSSREVDI GYDRSQEQRV LMESRRQEVV LLENEISFNE AVIEEREQGI QEVQQQIVEV NEIFKDLAVL
201: VHDQGAMIDD IGSHVENAHS ATGKGRSHLV KASRTQRSNS SLMCLLMVIF GIVLLIVVIV LAA
101: KDFEAVLKEF QKAQRVAADR ETSYTPFHPK SDLSSREVDI GYDRSQEQRV LMESRRQEVV LLENEISFNE AVIEEREQGI QEVQQQIVEV NEIFKDLAVL
201: VHDQGAMIDD IGSHVENAHS ATGKGRSHLV KASRTQRSNS SLMCLLMVIF GIVLLIVVIV LAA
001: MVRSNDVKFQ VYDAELTHFD LESNNNLQYS LSLNLSIRNS KSSIGIHYDR FEATVYYMNQ RLGAVPMPLF YLGSKNTMLL RALFEGQTLV LLKGNERKKF
101: EDDQKTGVYR IDVKLSINFR VMVLHLVTWP MKPVVRCHLK IPLALGSSNS TGGHKKMLLI GQLVKDTSAN LREASETDHR RDVAQSKKIA DAKLAKDFEA
201: ALKEFQKAQH ITVERETSYI PFDPKGSFSS SEVDIGYDRS QEQRVLMESR RQEIVLLDNE ISLNEARIEA REQGIQEVKH QISEVMEMFK DLAVMVDHQG
301: TIDDIDEKID NLRSAAAQGK SHLVKASNTQ GSNSSLMCLC WK
101: EDDQKTGVYR IDVKLSINFR VMVLHLVTWP MKPVVRCHLK IPLALGSSNS TGGHKKMLLI GQLVKDTSAN LREASETDHR RDVAQSKKIA DAKLAKDFEA
201: ALKEFQKAQH ITVERETSYI PFDPKGSFSS SEVDIGYDRS QEQRVLMESR RQEIVLLDNE ISLNEARIEA REQGIQEVKH QISEVMEMFK DLAVMVDHQG
301: TIDDIDEKID NLRSAAAQGK SHLVKASNTQ GSNSSLMCLC WK
Arabidopsis Description
SYP24Putative syntaxin-24 [Source:UniProtKB/Swiss-Prot;Acc:Q9C615]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.