CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, golgi, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	golgi
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70720	Canola	cytosol, plastid	93.84	93.84
CDX78712	Canola	cytosol, plastid	93.12	93.12
CDX69417	Canola	cytosol, plastid	93.84	92.83
CDY38084	Canola	cytosol	60.51	84.77
VIT_16s0039g01850.t01	Wine grape	cytosol	67.03	66.55
CDX78796	Canola	cytosol	65.58	65.58
CDY37158	Canola	cytosol	63.41	65.54
CDY43620	Canola	cytosol	63.04	65.17
CDY33485	Canola	cytosol	63.41	64.81
CDY01478	Canola	cytosol	64.86	64.62
CDX77702	Canola	cytosol	63.41	64.58
CDY60786	Canola	cytosol	62.68	63.37
TraesCS3D01G180500.1	Wheat	cytosol	63.41	63.18
GSMUA_Achr7P04850_001	Banana	cytosol	62.32	63.0
TraesCS3A01G175000.1	Wheat	cytosol	63.04	62.82
CDX93845	Canola	cytosol	59.78	62.74
CDX90452	Canola	cytosol	63.04	62.59
CDY01290	Canola	cytosol	60.87	62.45
GSMUA_Achr1P15580_001	Banana	cytosol	61.59	62.27
HORVU3Hr1G035380.1	Barley	cytosol	61.96	61.73
GSMUA_Achr4P20770_001	Banana	cytosol	60.51	61.17
GSMUA_Achr5P04090_001	Banana	cytosol	61.59	60.93
EES02705	Sorghum	cytosol	61.59	60.71
Os01t0254900-01	Rice	plasma membrane	61.23	60.36
Solyc06g072760.2.1	Tomato	cytosol	53.99	52.65
Os02t0702800-01	Rice	cytosol	49.28	50.94
EES05663	Sorghum	cytosol	49.28	50.75
HORVU6Hr1G041590.1	Barley	cytosol	48.55	50.38
HORVU6Hr1G068640.1	Barley	cytosol	48.55	50.38
Zm00001d040286_P003	Maize	cytosol	53.99	49.83
Zm00001d017756_P001	Maize	extracellular	43.84	48.79
TraesCS6A01G271000.1	Wheat	cytosol	45.65	46.84
TraesCS6D01G244100.2	Wheat	cytosol	48.19	45.55
TraesCS6B01G298100.3	Wheat	cytosol	44.93	44.77
PGSC0003DMT400069241	Potato	cytosol	42.03	43.61
Zm00001d008333_P003	Maize	cytosol	48.91	41.54
Zm00001d039536_P001	Maize	cytosol	35.14	36.88
CDY03181	Canola	cytosol	26.45	27.97

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.70	MapMan:22.7.1.2	GO:A0A078FVJ3	UniProt:A0A078FVJ3	EnsemblPlants:CDY16976
ProteinID:CDY16976	ProteinID:CDY16976.1	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016192	GO:GO:0061025
EnsemblPlantsGene:GSBRNA2T00094911001	InterPro:IPR000727	PFAM:PF05739	PFAM:PF14523	ScanProsite:PS00914	PFscan:PS50192
PANTHER:PTHR19957	PANTHER:PTHR19957:SF138	SMART:SM00397	SMART:SM00503	InterPro:SNARE	SUPFAM:SSF47661
InterPro:Syntaxin/epimorphin_CS	InterPro:Syntaxin_N	TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI0004EDDB2B	SEG:seg

Description

BnaC09g41030DBnaC09g41030D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FVJ3]

Coordinates

chrLK032068:+:664180..666434

Molecular Weight (calculated)

30825.9 Da

IEP (calculated)

5.090

GRAVY (calculated)

-0.217

Length

276 amino acids

Sequence
(BLAST)

001: MSFQDLEAGF RFQTPNRGRQ QKPLSRGDPS QEVAAGIFRI STAVNSFFRL VNSIGTPKDT LELREKLQKT RLQISELVKN TSAKLKEASE ADLHGAATPI
101: KKIADAKLAK DFQSVLKEFQ KAQRLAAERE ITYTPVVTQD IPASYDAQEL DIESLRTSQE QTLLLQSRRQ EVVFLDNEIT FNEAIIEERE QGIREIQEQI
201: GEVNEIFKDL AVLVNDQGVM IDDISSNIDN SHAATSQATA QLRKASKTQR ANSSLTCLLI LIFGIVILIV IIVVLV

Best Arabidopsis Sequence Match ( AT5G16830.1 )
(BLAST)

001: MSFQDLEAGT RSPAPNRFTG GRQQRPSSRG DPSQEVAAGI FRISTAVNSF FRLVNSIGTP KDTLELRDKL QKTRLQISEL VKNTSAKLKE ASEADLHGSA
101: SQIKKIADAK LAKDFQSVLK EFQKAQRLAA EREITYTPVV TKEIPTSYNA PELDTESLRI SQQQALLLQS RRQEVVFLDN EITFNEAIIE EREQGIREIE
201: DQIRDVNGMF KDLALMVNHQ GNIVDDISSN LDNSHAATTQ ATVQLRKAAK TQRSNSSLTC LLILIFGIVL LIVIIVVLV

Arabidopsis Description

SYP21Syntaxin-21 [Source:UniProtKB/Swiss-Prot;Acc:Q39233]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.