Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra022073.1-P | Field mustard | cytosol | 97.75 | 97.75 |
| CDY43620 | Canola | cytosol | 97.38 | 97.38 |
| CDY33485 | Canola | cytosol | 92.51 | 91.48 |
| CDX77702 | Canola | cytosol | 92.51 | 91.14 |
| AT5G46860.1 | Thale cress | cytosol | 90.64 | 90.3 |
| CDX78796 | Canola | cytosol | 82.02 | 79.35 |
| KRH07229 | Soybean | endoplasmic reticulum | 78.65 | 76.92 |
| KRH74378 | Soybean | cytosol | 78.28 | 76.56 |
| KRH39570 | Soybean | cytosol | 77.9 | 76.19 |
| KRH07476 | Soybean | cytosol | 77.53 | 75.82 |
| CDY60786 | Canola | cytosol | 77.53 | 75.82 |
| CDY01478 | Canola | cytosol | 78.65 | 75.81 |
| CDY01290 | Canola | cytosol | 74.91 | 74.35 |
| CDX93845 | Canola | cytosol | 71.54 | 72.62 |
| CDX90452 | Canola | cytosol | 75.28 | 72.3 |
| GSMUA_Achr7P04850_001 | Banana | cytosol | 72.66 | 71.06 |
| TraesCS3D01G180500.1 | Wheat | cytosol | 73.03 | 70.4 |
| TraesCS3A01G175000.1 | Wheat | cytosol | 72.28 | 69.68 |
| Os01t0254900-01 | Rice | plasma membrane | 73.03 | 69.64 |
| HORVU3Hr1G035380.1 | Barley | cytosol | 71.16 | 68.59 |
| GSMUA_Achr4P20770_001 | Banana | cytosol | 70.04 | 68.5 |
| EES02705 | Sorghum | cytosol | 71.16 | 67.86 |
| GSMUA_Achr5P04090_001 | Banana | cytosol | 70.41 | 67.38 |
| GSMUA_Achr1P15580_001 | Banana | cytosol | 68.54 | 67.03 |
| CDX78712 | Canola | cytosol, plastid | 67.04 | 64.86 |
| CDX70720 | Canola | cytosol, plastid | 66.29 | 64.13 |
| CDY38084 | Canola | cytosol | 46.82 | 63.45 |
| CDY16976 | Canola | cytosol, plastid | 65.54 | 63.41 |
| CDX69417 | Canola | cytosol, plastid | 65.54 | 62.72 |
| Zm00001d040286_P003 | Maize | cytosol | 62.55 | 55.85 |
| Os02t0702800-01 | Rice | cytosol | 53.93 | 53.93 |
| HORVU6Hr1G041590.1 | Barley | cytosol | 51.69 | 51.88 |
| HORVU6Hr1G068640.1 | Barley | cytosol | 51.31 | 51.5 |
| Zm00001d017756_P001 | Maize | extracellular | 47.57 | 51.21 |
| EES05663 | Sorghum | cytosol | 50.94 | 50.75 |
| TraesCS6D01G244100.2 | Wheat | cytosol | 51.69 | 47.26 |
| TraesCS6A01G271000.1 | Wheat | cytosol | 47.19 | 46.84 |
| TraesCS6B01G298100.3 | Wheat | cytosol | 47.19 | 45.49 |
| Zm00001d008333_P003 | Maize | cytosol | 53.18 | 43.69 |
| Zm00001d039536_P001 | Maize | cytosol | 39.7 | 40.3 |
| CDY03181 | Canola | cytosol | 35.58 | 36.4 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.70 | MapMan:22.7.1.2 | GO:A0A078HJY3 | UniProt:A0A078HJY3 | EnsemblPlants:CDY37158 |
| ProteinID:CDY37158 | ProteinID:CDY37158.1 | GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016192 | GO:GO:0061025 |
| EnsemblPlantsGene:GSBRNA2T00063418001 | InterPro:IPR000727 | PFAM:PF05739 | PFAM:PF14523 | ScanProsite:PS00914 | PFscan:PS50192 |
| PANTHER:PTHR19957 | PANTHER:PTHR19957:SF138 | SMART:SM00397 | SMART:SM00503 | InterPro:SNARE | SUPFAM:SSF47661 |
| InterPro:Syntaxin/epimorphin_CS | InterPro:Syntaxin_N | TMHMM:TMhelix | InterPro:T_SNARE_dom | UniParc:UPI0004EE54C7 | SEG:seg |
Description
BnaA02g24770DBnaA02g24770D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HJY3]
Coordinates
chrLK032393:-:121016..122945
Molecular Weight (calculated)
29179.6 Da
IEP (calculated)
6.373
GRAVY (calculated)
-0.355
Length
267 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFQDLEAGR GRSRKTNGGR QDSTQAVASG IFQINTGVST FQRLVNTLGT PRDTPELRDK LHKTRLHIGQ LVKDTSAKLK EASETDHQTG VNPSKKIADA
101: KLAKDFQAVL KEFQKAQQTA AERETAYAPL VPPSAQTTSY SAGEADKISE QRAQVMESKR QELVLLDNEI AFNEAVIEER EQGIQEIHTQ IGEVNEIFKD
201: LAVLVNDQGV MIDDIGTHID NSRAATSQGR SQLAQAAKTQ RSNSSLTCLL LVIFGIVLLI VIIVLAA
101: KLAKDFQAVL KEFQKAQQTA AERETAYAPL VPPSAQTTSY SAGEADKISE QRAQVMESKR QELVLLDNEI AFNEAVIEER EQGIQEIHTQ IGEVNEIFKD
201: LAVLVNDQGV MIDDIGTHID NSRAATSQGR SQLAQAAKTQ RSNSSLTCLL LVIFGIVLLI VIIVLAA
001: MSFQDLESGR GRSTRKFNGG RQDSTQAVAS GIFQINTGVS TFQRLVNTLG TPKDTPELRE KLHKTRLHIG QLVKDTSAKL KEASETDHQS GVNPSKKIAD
101: AKLARDFQAV LKEFQKAQQT AAERETTYTP FVPQSALPSS YTAGEVDKVP EQRAQLQESK RQELVLLDNE IAFNEAVIEE REQGIQEIHQ QIGEVNEIFK
201: DLAVLVNDQG VMIDDIGTHI DNSRAATSQG KSQLVQAAKT QKSNSSLTCL LLVIFGIVLL IVIIVLAA
101: AKLARDFQAV LKEFQKAQQT AAERETTYTP FVPQSALPSS YTAGEVDKVP EQRAQLQESK RQELVLLDNE IAFNEAVIEE REQGIQEIHQ QIGEVNEIFK
201: DLAVLVNDQG VMIDDIGTHI DNSRAATSQG KSQLVQAAKT QKSNSSLTCL LLVIFGIVLL IVIIVLAA
Arabidopsis Description
SYP22VAM3 [Source:UniProtKB/TrEMBL;Acc:A0A178UDT6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.