CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 3
plastid 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
BaCelLo:	cytosol
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000808.1-P	Field mustard	cytosol	96.32	98.88
CDY21320	Canola	plastid	95.77	98.32
CDY16637	Canola	plastid	96.45	95.8
CDX86132	Canola	plastid	95.5	94.85
AT4G04910.1	Thale cress	plastid	93.45	92.32
CDY39223	Canola	cytosol, mitochondrion	13.92	89.47
VIT_19s0014g02750.t01	Wine grape	cytosol	79.67	79.03
KRH50033	Soybean	endoplasmic reticulum, nucleus	79.13	77.75
KRH20460	Soybean	endoplasmic reticulum	78.31	77.36
CDY34435	Canola	cytosol	73.12	73.22
CDY32219	Canola	cytosol	72.58	72.09
GSMUA_Achr6P26250_001	Banana	cytosol	4.5	71.74
PGSC0003DMT400076472	Potato	cytosol	77.22	71.65
EER93779	Sorghum	cytosol	72.31	71.33
Os05t0519400-01	Rice	plasma membrane	72.31	71.33
Zm00001d038808_P001	Maize	cytosol	71.9	71.12
TraesCS1B01G352200.2	Wheat	cytosol, mitochondrion	71.49	70.52
TraesCS1D01G341900.2	Wheat	cytosol	71.62	70.47
TraesCS1A01G339900.1	Wheat	unclear	71.62	70.28
Zm00001d051286_P013	Maize	cytosol	70.94	68.42
HORVU1Hr1G076180.22	Barley	cytosol	71.62	66.04
CDY09518	Canola	cytosol	39.84	63.76
PGSC0003DMT400076471	Potato	cytosol	15.55	58.76
KRH24495	Soybean	cytosol	17.19	53.85
Zm00001d000156_P001	Maize	cytosol	18.01	30.99
CDX96221	Canola	cytosol	2.59	15.45
CDY10163	Canola	nucleus	19.51	12.03
CDY06186	Canola	nucleus	19.65	11.99
CDY47705	Canola	nucleus	19.37	11.96
CDY10003	Canola	nucleus	19.51	11.94
CDX75809	Canola	nucleus	17.46	6.95
CDX82447	Canola	nucleus	17.33	6.92
Solyc07g062770.2.1	Tomato	nucleus	6.41	6.39

Protein Annotations

Gene3D:1.10.8.60	Gene3D:2.40.40.20	Gene3D:3.10.330.10	Gene3D:3.40.50.300	MapMan:50.3.6	GO:A0A078DNT2
InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	InterPro:Asp_de-COase-like_dom_sf	InterPro:CDC48_domain_2-like_sf	InterPro:CDC4_N-term_subdom
EnsemblPlants:CDX90880	ProteinID:CDX90880	ProteinID:CDX90880.1	InterPro:Cdc48_dom2	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:GSBRNA2T00151603001	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02933
ScanProsite:PS00674	PANTHER:PTHR23078	PANTHER:PTHR23078:SF11	SMART:SM00382	SMART:SM01073	SUPFAM:SSF50692
SUPFAM:SSF52540	SUPFAM:SSF54585	UniParc:UPI0004EE683B	SEG:seg	:	:

Description

BnaA03g25600D

Coordinates

chrLK031864:-:1066773..1072337

Molecular Weight (calculated)

80832.5 Da

IEP (calculated)

6.119

GRAVY (calculated)

-0.108

Length

733 amino acids

Sequence
(BLAST)

001: MAGGYGSQVM TMTVTNTPSA DLAFTNLAYC SSSDLRQFSV PGSDLFLANV FKMLNYSTFI RDGSIALNAI QRRHARVSTG DMVSVSRFVP PENFELAMLT
101: LELEFVKKGT KSEQVDAALL STQLKRKYIN QVLTVGQKAT FEYHGTNYIL TVNRADVEGQ NGIERGMLSQ DTYIVFEASN ASGIKIVNQR EAASSNIFKH
201: KEFNLESLGI GGLGAEFADI FRRAFASRVF PPHVTSRLGI KHVKGMLLFG PPGTGKTLMA RQIGKMLNGK DPKIVNGPEV LSKFVGETEK NVRDLFADAE
301: QDQRTLGDAS ELHVIIFDEI DAICKSRGST RDGTGVHDSI VNQLLTKIDG VEALNNVLLI GMTNRKDLLD EALLRPGRLE VQVEISLPDE AGRLQILQIH
401: TNKMKENSFL GHDINLQELA ARTKNYSGAE LEGVVKSATS YALNRQLSMD DLTKPVEEEN IKITMEDFLH AIHEVQPAFG ASTDDLERCR LNGMVDSGDR
501: HNHIYKRAML LVEQVKVSTR SPLVTCLLEG PSGSGKTALA ATVGIDSDFP YVKIVSAETM IGLHESTKCA HIVKVFEDAY KSPMSIIILD DIERLLEYVA
601: IGPRFSNIIS QTLMVLLKRL PPKGKKLLVF GTTSQLTFLD SVGICEAFSI TYSVPTLRTE DAKKVLKQLN VFSEDDVEAA AEALDDMPIK KLYMLIEMAA
701: QGEYGGSAEA IYAGREKIKL THFFDCLQDV VRF

Best Arabidopsis Sequence Match ( AT4G04910.1 )
(BLAST)

001: MAGRYGSQVM TMTVTNTPSA DLAFTNLAYC SSSDLRQFSV PGSDLFLANV ADSFILSLCG HGSIRDGNIA LNAIQRRHAR VSTGDMVSVS RFVPPENFDL
101: AMLTLELEFV KKGTKSEQVD AALLSTQLKR KYTNQVLTVG QKATFEYHGT NYILTVNRAD VEGQDHTNGI ERGLLSKDTY IVFEASNASG IKIVNQREAA
201: SSNIFKHKEF NLESLGIGGL GAEFADIFRR AFASRVFPPH VTSRLGIKHV KGMLLFGPPG TGKTLMARQI GKMLNGKDPK IVNGPEVLSK FVGETEKNVR
301: DLFADAEQDQ RTLGDASELH VIIFDEIDAI CKSRGSTRDG TGVHDSIVNQ LLTKIDGVEA LNNVLLIGMT NRKDLLDEAL LRPGRLEVQV EISLPDEAGR
401: LQILQIHTNK MKENSFLGTD INLQELAART KNYSGAELEG VVKSATSYAL NRQLSMDDLT KPVEEENIKI TMEDFLHAIY EVQPAFGAST DDLERCRLNG
501: MVDCGHRHNH IYKRAMLLVE QVKVSTRSPL VTCLLEGPSG SGKTALAATI GIDSDFPYVK IVSAETMIGL SESTKCAHIV KVFEDAYKSP MSIIILDDIE
601: RLLEFIAIGP RFSNIISQTL MVLLKRLPPK GKKLLVFGTT SEVTFLESVG ISDCFSVTHS VPTLQKEDAK KVLNQLNLFS EDDVDSAAEA LNDMPIKKIY
701: MLIEMAAQGE NGGSAEAIYA GREKININHF YDCLGDFIRF TG

Arabidopsis Description

NSFNSF [Source:UniProtKB/TrEMBL;Acc:A0A178UTB9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.