CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038808_P001	Maize	cytosol	96.64	96.9
Zm00001d051286_P013	Maize	cytosol	94.62	92.5
Os05t0519400-01	Rice	plasma membrane	91.52	91.52
TraesCS1B01G352200.2	Wheat	cytosol, mitochondrion	88.96	88.96
TraesCS1A01G339900.1	Wheat	unclear	88.43	87.95
TraesCS1D01G341900.2	Wheat	cytosol	88.16	87.92
CDY39223	Canola	cytosol, mitochondrion	12.79	83.33
HORVU1Hr1G076180.22	Barley	cytosol	88.43	82.64
Solyc01g104920.2.1	Tomato	plastid	71.74	77.02
GSMUA_Achr8P27650_001	Banana	cytosol	77.25	76.84
GSMUA_Achr9P05850_001	Banana	cytosol	76.72	76.72
VIT_19s0014g02750.t01	Wine grape	cytosol	75.24	75.64
Bra000808.1-P	Field mustard	cytosol	71.2	74.09
CDY21320	Canola	plastid	71.06	73.95
KRH50033	Soybean	endoplasmic reticulum, nucleus	73.76	73.46
KRH20460	Soybean	endoplasmic reticulum	72.81	72.91
CDX90880	Canola	plastid	71.33	72.31
Bra029529.1-P	Field mustard	plastid	71.6	72.28
CDX86132	Canola	plastid	71.2	71.68
AT4G04910.1	Thale cress	plastid	71.47	71.56
CDY16637	Canola	plastid	70.93	71.41
PGSC0003DMT400076472	Potato	cytosol	72.27	67.97
Bra033538.1-P	Field mustard	cytosol	58.14	65.95
CDY34435	Canola	cytosol	63.12	64.07
CDY32219	Canola	cytosol	62.58	63.01
CDY09518	Canola	cytosol	35.13	56.99
KRH24495	Soybean	cytosol	17.09	54.27
Solyc01g104930.1.1	Tomato	cytosol	13.32	54.1
PGSC0003DMT400076471	Potato	cytosol	13.86	53.09
Zm00001d000156_P001	Maize	cytosol	21.27	37.09
EER97044	Sorghum	cytosol	20.59	12.78
OQU87303	Sorghum	cytosol	17.9	7.89

Protein Annotations

Gene3D:1.10.8.60	Gene3D:2.40.40.20	Gene3D:3.10.330.10	Gene3D:3.40.50.300	MapMan:50.3.6	EntrezGene:8062246
InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	InterPro:Asp_de-COase-like_dom_sf	UniProt:C5WS54	InterPro:CDC48_domain_2-like_sf
InterPro:CDC4_N-term_subdom	InterPro:Cdc48_dom2	EnsemblPlants:EER93779	ProteinID:EER93779	ProteinID:EER93779.1	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005773	GO:GO:0005794	GO:GO:0005886	GO:GO:0009506	GO:GO:0016020
InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02359	PFAM:PF02933	ScanProsite:PS00674	PANTHER:PTHR23078
PANTHER:PTHR23078:SF11	SMART:SM00382	SMART:SM01073	EnsemblPlantsGene:SORBI_3001G161700	SUPFAM:SSF50692	SUPFAM:SSF52540
SUPFAM:SSF54585	unigene:Sbi.4320	UniParc:UPI0001A82B8A	RefSeq:XP_002466781.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:-:13304908..13312799

Molecular Weight (calculated)

81452.9 Da

IEP (calculated)

6.040

GRAVY (calculated)

-0.126

Length

743 amino acids

Sequence
(BLAST)

001: MAGRYYQGQG GGGGGGASME VVSTPNQELA LTNCAYISPA DLRRFPNGLA LVADAWVFTL RDHNAVASGR IALNAIQRRQ AKVSAGDSVT VSSFVPPDDF
101: KLALLTLELE YAKARANRND ELDAVVLAQQ LRKRFLDQVM TSGQRVPFEF YGTNYVFTVN QALLEGQESS TPLDRGYLSS DTYIIFEAAP NSGIKVINQK
201: EAASSKLFKH KEFNLEKLGI GGLSAEFTDI FRRAFASRVF PPHVVSKLGI KHVKGILLYG PPGTGKTLMA RQIGKLLNGK DPKIVNGPEV LSKFVGETEK
301: NVRDLFADAE NEQRTRGDQS DLHVIIFDEI DAICKSRGST RDGTGVHDSI VNQLLTKIDG VEALNNVLLI GMTNRKDLLD EALLRPGRLE VHIEINLPDE
401: NGRLQILQIH TNKMKENSFL SPDINLHELA ARTKNYSGAE LEGVVKSAVS YALNRQITMD DLTKPLDEES IKVTMDDFVN ALHEITPAFG ASTDDLERCR
501: LRGIVDCGKA HKHIYQRAML LVEQVKVSKG SPLVTCLLEG PAGSGKTAMA ASVGIDSDFA YVKIISAETM IGFSESSKCA QICKVFEDAY KSQFSIIILD
601: DIERLLEYVA IGPRFSNLIS QTLLVLLKRV PPKGKNLLVI GTTSEVGFLE SVGMCDVFSV TYHVPKLKKE DAKKVLHRLD VFDDGDLDAA AEALDDMPIK
701: KLYTLVEMAA QGPTGGSAEA IYTGEDKIDI NHFFSILSDI IRY

Best Arabidopsis Sequence Match ( AT4G04910.1 )
(BLAST)

001: MAGRYGSQVM TMTVTNTPSA DLAFTNLAYC SSSDLRQFSV PGSDLFLANV ADSFILSLCG HGSIRDGNIA LNAIQRRHAR VSTGDMVSVS RFVPPENFDL
101: AMLTLELEFV KKGTKSEQVD AALLSTQLKR KYTNQVLTVG QKATFEYHGT NYILTVNRAD VEGQDHTNGI ERGLLSKDTY IVFEASNASG IKIVNQREAA
201: SSNIFKHKEF NLESLGIGGL GAEFADIFRR AFASRVFPPH VTSRLGIKHV KGMLLFGPPG TGKTLMARQI GKMLNGKDPK IVNGPEVLSK FVGETEKNVR
301: DLFADAEQDQ RTLGDASELH VIIFDEIDAI CKSRGSTRDG TGVHDSIVNQ LLTKIDGVEA LNNVLLIGMT NRKDLLDEAL LRPGRLEVQV EISLPDEAGR
401: LQILQIHTNK MKENSFLGTD INLQELAART KNYSGAELEG VVKSATSYAL NRQLSMDDLT KPVEEENIKI TMEDFLHAIY EVQPAFGAST DDLERCRLNG
501: MVDCGHRHNH IYKRAMLLVE QVKVSTRSPL VTCLLEGPSG SGKTALAATI GIDSDFPYVK IVSAETMIGL SESTKCAHIV KVFEDAYKSP MSIIILDDIE
601: RLLEFIAIGP RFSNIISQTL MVLLKRLPPK GKKLLVFGTT SEVTFLESVG ISDCFSVTHS VPTLQKEDAK KVLNQLNLFS EDDVDSAAEA LNDMPIKKIY
701: MLIEMAAQGE NGGSAEAIYA GREKININHF YDCLGDFIRF TG

Arabidopsis Description

NSFNSF [Source:UniProtKB/TrEMBL;Acc:A0A178UTB9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.