Factsheet for PGSC0003DMT400076471

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
endoplasmic reticulum 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g104930.1.1	Tomato	cytosol	49.48	52.46
PGSC0003DMT400076472	Potato	cytosol	68.56	16.84
VIT_19s0014g02750.t01	Wine grape	cytosol	62.89	16.51
KRH50033	Soybean	endoplasmic reticulum, nucleus	63.4	16.49
KRH20460	Soybean	endoplasmic reticulum	62.89	16.44
Bra029529.1-P	Field mustard	plastid	60.31	15.9
AT4G04910.1	Thale cress	plastid	60.31	15.77
CDY16637	Canola	plastid	59.28	15.58
CDX90880	Canola	plastid	58.76	15.55
CDX86132	Canola	plastid	57.73	15.18
Bra000808.1-P	Field mustard	cytosol	54.64	14.85
CDY21320	Canola	plastid	54.12	14.71
EER93779	Sorghum	cytosol	53.09	13.86
Zm00001d038808_P001	Maize	cytosol	52.06	13.63
CDY34435	Canola	cytosol	50.52	13.39
Os05t0519400-01	Rice	plasma membrane	51.03	13.32
TraesCS1D01G341900.2	Wheat	cytosol	51.03	13.29
TraesCS1A01G339900.1	Wheat	unclear	51.03	13.25
TraesCS1B01G352200.2	Wheat	cytosol, mitochondrion	50.52	13.19
CDY32219	Canola	cytosol	48.45	12.74
Zm00001d051286_P013	Maize	cytosol	49.48	12.63
HORVU1Hr1G076180.22	Barley	cytosol	51.03	12.45
CDY09518	Canola	cytosol	22.68	9.61
Bra033538.1-P	Field mustard	cytosol	31.96	9.47
CDY39223	Canola	cytosol, mitochondrion	5.15	8.77
KRH24495	Soybean	cytosol	8.25	6.84
Zm00001d000156_P001	Maize	cytosol	6.19	2.82
PGSC0003DMT400032278	Potato	cytosol, mitochondrion, nucleus	13.92	1.47
GSMUA_Achr6P26190_001	Banana	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400076471	EnsemblPlantsGene:PGSC0003DMG401029739	Gene3D:2.40.40.20	Gene3D:3.40.50.300	InterPro:Asp_de-COase-like_dom_sf	InterPro:P-loop_NTPase
PANTHER:PTHR23078	PANTHER:PTHR23078:SF11	PGSC:PGSC0003DMG401029739	SUPFAM:SSF50692	SUPFAM:SSF52540	UniParc:UPI000296E601
UniProt:M1CWU4	MapMan:35.1	:	:	:	:

Description

N-ethylmaleimide sensitive fusion protein [Source:PGSC_GENE;Acc:PGSC0003DMG401029739]

Coordinates

chr1:-:81704524..81707511

Molecular Weight (calculated)

21194.5 Da

IEP (calculated)

9.474

GRAVY (calculated)

-0.019

Length

194 amino acids

Sequence
(BLAST)

001: MNVTTTPAKD LAYTNCAYCS PTDLRNFPVP GSKFSYALIA DAFVLTLTAH DAIPNGQLGL NAIQRRYAKL STGDAISVSR FVPTENFNLA LLTLDLEFVK
101: KGTKEEQVDA VSLANQVRKR FANQFNFESL GIGGLSAEFS DIFRRAFASR VFPPHVTSKL GIKHVKEILL HGPPGTEKTL LMSKAAASWD LIST

Best Arabidopsis Sequence Match ( AT4G04910.1 )
(BLAST)

001: MAGRYGSQVM TMTVTNTPSA DLAFTNLAYC SSSDLRQFSV PGSDLFLANV ADSFILSLCG HGSIRDGNIA LNAIQRRHAR VSTGDMVSVS RFVPPENFDL
101: AMLTLELEFV KKGTKSEQVD AALLSTQLKR KYTNQVLTVG QKATFEYHGT NYILTVNRAD VEGQDHTNGI ERGLLSKDTY IVFEASNASG IKIVNQREAA
201: SSNIFKHKEF NLESLGIGGL GAEFADIFRR AFASRVFPPH VTSRLGIKHV KGMLLFGPPG TGKTLMARQI GKMLNGKDPK IVNGPEVLSK FVGETEKNVR
301: DLFADAEQDQ RTLGDASELH VIIFDEIDAI CKSRGSTRDG TGVHDSIVNQ LLTKIDGVEA LNNVLLIGMT NRKDLLDEAL LRPGRLEVQV EISLPDEAGR
401: LQILQIHTNK MKENSFLGTD INLQELAART KNYSGAELEG VVKSATSYAL NRQLSMDDLT KPVEEENIKI TMEDFLHAIY EVQPAFGAST DDLERCRLNG
501: MVDCGHRHNH IYKRAMLLVE QVKVSTRSPL VTCLLEGPSG SGKTALAATI GIDSDFPYVK IVSAETMIGL SESTKCAHIV KVFEDAYKSP MSIIILDDIE
601: RLLEFIAIGP RFSNIISQTL MVLLKRLPPK GKKLLVFGTT SEVTFLESVG ISDCFSVTHS VPTLQKEDAK KVLNQLNLFS EDDVDSAAEA LNDMPIKKIY
701: MLIEMAAQGE NGGSAEAIYA GREKININHF YDCLGDFIRF TG

Arabidopsis Description

NSFNSF [Source:UniProtKB/TrEMBL;Acc:A0A178UTB9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.