CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21320	Canola	plastid	93.9	97.06
Bra029529.1-P	Field mustard	plastid	96.48	96.74
CDY16637	Canola	plastid	96.48	96.48
CDX90880	Canola	plastid	94.85	95.5
AT4G04910.1	Thale cress	plastid	91.46	90.97
CDY39223	Canola	cytosol, mitochondrion	13.82	89.47
VIT_19s0014g02750.t01	Wine grape	cytosol	78.05	77.94
KRH50033	Soybean	endoplasmic reticulum, nucleus	77.91	77.08
KRH20460	Soybean	endoplasmic reticulum	77.1	76.68
CDY34435	Canola	cytosol	71.41	71.99
GSMUA_Achr6P26250_001	Banana	cytosol	4.47	71.74
CDY32219	Canola	cytosol	71.54	71.54
Zm00001d038808_P001	Maize	cytosol	71.68	71.39
EER93779	Sorghum	cytosol	71.68	71.2
Os05t0519400-01	Rice	plasma membrane	71.54	71.06
PGSC0003DMT400076472	Potato	cytosol	75.75	70.76
TraesCS1B01G352200.2	Wheat	cytosol, mitochondrion	70.19	69.72
TraesCS1D01G341900.2	Wheat	cytosol	70.33	69.66
TraesCS1A01G339900.1	Wheat	unclear	70.33	69.48
Zm00001d051286_P013	Maize	cytosol	70.6	68.55
HORVU1Hr1G076180.22	Barley	cytosol	70.6	65.53
CDY09518	Canola	cytosol	39.7	63.97
PGSC0003DMT400076471	Potato	cytosol	15.18	57.73
KRH24495	Soybean	cytosol	16.8	52.99
Zm00001d000156_P001	Maize	cytosol	17.75	30.75
CDX96221	Canola	cytosol	2.57	15.45
CDY10163	Canola	nucleus	19.38	12.03
CDY06186	Canola	nucleus	19.51	11.99
CDY47705	Canola	nucleus	19.24	11.96
CDY10003	Canola	nucleus	19.38	11.94
CDX75809	Canola	nucleus	17.34	6.95
CDX82447	Canola	nucleus	17.21	6.92
Solyc07g062770.2.1	Tomato	nucleus	6.37	6.39

Protein Annotations

Gene3D:1.10.8.60	Gene3D:2.40.40.20	Gene3D:3.10.330.10	Gene3D:3.40.50.300	MapMan:50.3.6	GO:A0A078DAS3
InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	InterPro:Asp_de-COase-like_dom_sf	InterPro:CDC48_domain_2-like_sf	EnsemblPlants:CDX86132
ProteinID:CDX86132	ProteinID:CDX86132.1	InterPro:Cdc48_dom2	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	EnsemblPlantsGene:GSBRNA2T00144185001	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02933	ScanProsite:PS00674
PANTHER:PTHR23078	PANTHER:PTHR23078:SF11	SMART:SM00382	SUPFAM:SSF50692	SUPFAM:SSF52540	SUPFAM:SSF54585
UniParc:UPI0004EF3F6F	SEG:seg	:	:	:	:

Description

BnaC03g56470D

Coordinates

chrLK031844:+:1736093..1741841

Molecular Weight (calculated)

81269.9 Da

IEP (calculated)

6.380

GRAVY (calculated)

-0.123

Length

738 amino acids

Sequence
(BLAST)

001: MAGRSGSQVM TMTVTSTPSA DLAFTNLAYC SSSDLRQFSH SFLGFGNSNI SHLGVSWMIK IIRDGNLALN AIQRRHARVS TGDMVSVSRF VPPENFELAM
101: LTLELEFVKK GTKSEQVDAA LLSTQLKRKY TNQVLTVGQK ATFEYHGTNY ILTVNRADVE GQNQSNGIER GMLSPDTYIV FEASNASGIK IVNQREAASS
201: NIFKHKEFNL ESLGIGGLGA EFADIFRRAF ASRVFPPHVT SRLGIKHVKG MLLFGPPGTG KTLMARQIGK MLNGKDPKIV NGPEVLSKFV GETEKNVRDL
301: FADAEQDQRT LGDASELHVI IFDEIDAICK SRGSTRDGTG VHDSIVNQLL TKIDGVEALN NVLLIGMTNR KDLLDEALLR PGRLEVQVEI SLPDEAGRFQ
401: ILQIHTNKMK ENSFLGHDIN LQELAARTKN YSGAELEGVV KSATSYALNR QLSMDDLTKP VEEENIKITM EDFLHAIHEV QPAFGASTDD LVRCRLNGMV
501: DSGDRHNHIY KRAMLLVEQV KVSTRSPLVT CLLEGPSGSG KTALAATVGI DSDFPYVKIV SAETMIGLQE STKCAHIVKV FEDAYKSPMS IIILDDIERL
601: LEYVAIGPRF SNIISQTLMV LLKRLPPKGK KLLVFGTTSQ LTFLDSVGIC EAFSITYSVP TLRTEDAKKV LKQLNVFSED DIDAAAEALD DMPIKKLYML
701: IEMAAQGEDG GSAEAIYAGR EKIKITHFFD CLQDVVRF

Best Arabidopsis Sequence Match ( AT4G04910.1 )
(BLAST)

001: MAGRYGSQVM TMTVTNTPSA DLAFTNLAYC SSSDLRQFSV PGSDLFLANV ADSFILSLCG HGSIRDGNIA LNAIQRRHAR VSTGDMVSVS RFVPPENFDL
101: AMLTLELEFV KKGTKSEQVD AALLSTQLKR KYTNQVLTVG QKATFEYHGT NYILTVNRAD VEGQDHTNGI ERGLLSKDTY IVFEASNASG IKIVNQREAA
201: SSNIFKHKEF NLESLGIGGL GAEFADIFRR AFASRVFPPH VTSRLGIKHV KGMLLFGPPG TGKTLMARQI GKMLNGKDPK IVNGPEVLSK FVGETEKNVR
301: DLFADAEQDQ RTLGDASELH VIIFDEIDAI CKSRGSTRDG TGVHDSIVNQ LLTKIDGVEA LNNVLLIGMT NRKDLLDEAL LRPGRLEVQV EISLPDEAGR
401: LQILQIHTNK MKENSFLGTD INLQELAART KNYSGAELEG VVKSATSYAL NRQLSMDDLT KPVEEENIKI TMEDFLHAIY EVQPAFGAST DDLERCRLNG
501: MVDCGHRHNH IYKRAMLLVE QVKVSTRSPL VTCLLEGPSG SGKTALAATI GIDSDFPYVK IVSAETMIGL SESTKCAHIV KVFEDAYKSP MSIIILDDIE
601: RLLEFIAIGP RFSNIISQTL MVLLKRLPPK GKKLLVFGTT SEVTFLESVG ISDCFSVTHS VPTLQKEDAK KVLNQLNLFS EDDVDSAAEA LNDMPIKKIY
701: MLIEMAAQGE NGGSAEAIYA GREKININHF YDCLGDFIRF TG

Arabidopsis Description

NSFNSF [Source:UniProtKB/TrEMBL;Acc:A0A178UTB9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.