Factsheet for TraesCS1A01G339900.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G352200.2	Wheat	cytosol, mitochondrion	98.13	98.65
TraesCS1D01G341900.2	Wheat	cytosol	98.26	98.52
HORVU1Hr1G076180.22	Barley	cytosol	97.46	91.57
Os05t0519400-01	Rice	plasma membrane	89.29	89.77
EER93779	Sorghum	cytosol	87.95	88.43
Zm00001d038808_P001	Maize	cytosol	87.42	88.12
Zm00001d051286_P013	Maize	cytosol	85.94	84.47
CDY39223	Canola	cytosol, mitochondrion	12.45	81.58
Solyc01g104920.2.1	Tomato	plastid	69.88	75.43
GSMUA_Achr9P05850_001	Banana	cytosol	74.83	75.24
GSMUA_Achr8P27650_001	Banana	cytosol	75.1	75.1
CDY21320	Canola	plastid	70.28	73.53
Bra000808.1-P	Field mustard	cytosol	70.01	73.25
VIT_19s0014g02750.t01	Wine grape	cytosol	72.29	73.07
CDX90880	Canola	plastid	70.28	71.62
KRH50033	Soybean	endoplasmic reticulum, nucleus	71.35	71.45
KRH20460	Soybean	endoplasmic reticulum	70.82	71.29
Bra029529.1-P	Field mustard	plastid	69.88	70.92
AT4G04910.1	Thale cress	plastid	69.88	70.35
CDX86132	Canola	plastid	69.48	70.33
CDY16637	Canola	plastid	69.48	70.33
PGSC0003DMT400076472	Potato	cytosol	70.15	66.33
Bra033538.1-P	Field mustard	cytosol	57.3	65.34
CDY34435	Canola	cytosol	61.58	62.84
CDY32219	Canola	cytosol	61.18	61.92
CDY09518	Canola	cytosol	34.14	55.68
KRH24495	Soybean	cytosol	17.14	54.7
Solyc01g104930.1.1	Tomato	cytosol	13.25	54.1
PGSC0003DMT400076471	Potato	cytosol	13.25	51.03
Zm00001d000156_P001	Maize	cytosol	19.68	34.51
TraesCS5A01G302000.1	Wheat	nucleus	20.08	12.5
TraesCS3A01G246500.2	Wheat	cytosol	17.4	7.06

Protein Annotations

Gene3D:1.10.8.60	Gene3D:2.40.40.20	Gene3D:3.10.330.10	Gene3D:3.40.50.300	MapMan:50.3.6	InterPro:AAA+_ATPase
InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	InterPro:Asp_de-COase-like_dom_sf	InterPro:CDC48_domain_2-like_sf	InterPro:CDC4_N-term_subdom	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02359
ScanProsite:PS00674	PANTHER:PTHR23078	PANTHER:PTHR23078:SF11	SMART:SM00382	SMART:SM01073	SUPFAM:SSF50692
SUPFAM:SSF52540	SUPFAM:SSF54585	EnsemblPlantsGene:TraesCS1A01G339900	EnsemblPlants:TraesCS1A01G339900.1	TIGR:cd00009	SEG:seg

Description

No Description!

Coordinates

chr1A:-:530210971..530217655

Molecular Weight (calculated)

81186.6 Da

IEP (calculated)

5.577

GRAVY (calculated)

-0.041

Length

747 amino acids

Sequence
(BLAST)

001: MAGRGYQGRG AGGGAGAGAG VSMAVVSTPS QELALTNCAY VSPADIRRFP TALALVGDVL VFALRAHDAV ATGSIALNAI QRRQVKVSAG DSITVSSFAP
101: PDDFKLALLT LELEYTKARS NRAEDLDAVL LAQQLRKRFL DQVMTSGQRV PFEFYGTNYI FSVNQALLEG QESSTPLDRG FLSSDTYIIF EAAPNSGIKV
201: INQKEAASSK LFKDKEFNLE KLGIGGLSSE FTDIFRRAFA SRVFPPHVVS KLGIKHVKGM LLYGPPGTGK TLMARQIGKL LNGKDPKIVN GPEVLSKFVG
301: ETEKNVRDLF LDAENDQKAQ GDHSDLHVII FDEIDAICKS RGSSRDGTGV HDSIVNQLLT KIDGVEALNN VLLIGMTNRK DLLDEALLRP GRLEVHIEIN
401: LPDENGRLQI LQIHTSKMRE SSFLSPDVNL QELAARTKNY SGAELEGVVK SAVSFALNRQ ISMDDLTKPL DEESIKVTMD DFVNGLHEIT PAFGASTDDL
501: ERCRLHGIVD CGKAHQHIFQ RAMLLVEQVK VSRGSPLVTC LLQGSAGSGK SALAATVGID SDFAYVKIIS AETMIGFSES SKCAQICKVF EDAYKSQFSI
601: IILDDIERLL EFVAIGPRFS NLISQTLMVL LKRVPPKGKN LLVIGTTSET TFLDSIGMSG VFSVTYEVPK LTKEDAAKVL RHLNVFDEAD VETAAEALDD
701: MPIKKLYTLV EMAAQGPQGG SAEAIYAGEE KIDLNHFFSI LSDIIRY

Best Arabidopsis Sequence Match ( AT4G04910.1 )
(BLAST)

001: MAGRYGSQVM TMTVTNTPSA DLAFTNLAYC SSSDLRQFSV PGSDLFLANV ADSFILSLCG HGSIRDGNIA LNAIQRRHAR VSTGDMVSVS RFVPPENFDL
101: AMLTLELEFV KKGTKSEQVD AALLSTQLKR KYTNQVLTVG QKATFEYHGT NYILTVNRAD VEGQDHTNGI ERGLLSKDTY IVFEASNASG IKIVNQREAA
201: SSNIFKHKEF NLESLGIGGL GAEFADIFRR AFASRVFPPH VTSRLGIKHV KGMLLFGPPG TGKTLMARQI GKMLNGKDPK IVNGPEVLSK FVGETEKNVR
301: DLFADAEQDQ RTLGDASELH VIIFDEIDAI CKSRGSTRDG TGVHDSIVNQ LLTKIDGVEA LNNVLLIGMT NRKDLLDEAL LRPGRLEVQV EISLPDEAGR
401: LQILQIHTNK MKENSFLGTD INLQELAART KNYSGAELEG VVKSATSYAL NRQLSMDDLT KPVEEENIKI TMEDFLHAIY EVQPAFGAST DDLERCRLNG
501: MVDCGHRHNH IYKRAMLLVE QVKVSTRSPL VTCLLEGPSG SGKTALAATI GIDSDFPYVK IVSAETMIGL SESTKCAHIV KVFEDAYKSP MSIIILDDIE
601: RLLEFIAIGP RFSNIISQTL MVLLKRLPPK GKKLLVFGTT SEVTFLESVG ISDCFSVTHS VPTLQKEDAK KVLNQLNLFS EDDVDSAAEA LNDMPIKKIY
701: MLIEMAAQGE NGGSAEAIYA GREKININHF YDCLGDFIRF TG

Arabidopsis Description

NSFNSF [Source:UniProtKB/TrEMBL;Acc:A0A178UTB9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.