CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 3
plastid 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
BaCelLo:	cytosol
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90880	Canola	plastid	98.32	95.77
CDX86132	Canola	plastid	97.06	93.9
CDY16637	Canola	plastid	96.78	93.63
AT4G04910.1	Thale cress	plastid	93.42	89.89
CDY39223	Canola	cytosol, mitochondrion	14.29	89.47
VIT_19s0014g02750.t01	Wine grape	cytosol	80.39	77.67
KRH50033	Soybean	endoplasmic reticulum, nucleus	79.97	76.54
KRH20460	Soybean	endoplasmic reticulum	79.27	76.28
GSMUA_Achr6P26250_001	Banana	cytosol	4.62	71.74
CDY34435	Canola	cytosol	73.25	71.45
Os05t0519400-01	Rice	plasma membrane	73.95	71.06
EER93779	Sorghum	cytosol	73.95	71.06
CDY32219	Canola	cytosol	73.39	71.0
Zm00001d038808_P001	Maize	cytosol	73.67	70.99
TraesCS1B01G352200.2	Wheat	cytosol, mitochondrion	73.39	70.52
TraesCS1D01G341900.2	Wheat	cytosol	73.53	70.47
TraesCS1A01G339900.1	Wheat	unclear	73.53	70.28
PGSC0003DMT400076472	Potato	cytosol	77.73	70.25
Zm00001d051286_P013	Maize	cytosol	72.69	68.29
HORVU1Hr1G076180.22	Barley	cytosol	73.53	66.04
CDY09518	Canola	cytosol	40.9	63.76
PGSC0003DMT400076471	Potato	cytosol	14.71	54.12
KRH24495	Soybean	cytosol	17.65	53.85
Zm00001d000156_P001	Maize	cytosol	18.49	30.99
CDX96221	Canola	cytosol	2.66	15.45
CDY06186	Canola	nucleus	20.03	11.91
CDY10163	Canola	nucleus	19.75	11.86
CDY10003	Canola	nucleus	19.89	11.85
CDY47705	Canola	nucleus	19.61	11.79
CDX75809	Canola	nucleus	18.07	7.0
CDX82447	Canola	nucleus	17.93	6.97
Solyc07g062770.2.1	Tomato	nucleus	6.44	6.25

Protein Annotations

Gene3D:1.10.8.60	Gene3D:3.10.330.10	Gene3D:3.40.50.300	MapMan:50.3.6	GO:A0A078G4C1	UniProt:A0A078G4C1
InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	InterPro:Asp_de-COase-like_dom_sf	InterPro:CDC48_domain_2-like_sf	InterPro:CDC4_N-term_subdom
EnsemblPlants:CDY21320	ProteinID:CDY21320	ProteinID:CDY21320.1	InterPro:Cdc48_dom2	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:GSBRNA2T00015661001	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02933
ScanProsite:PS00674	PANTHER:PTHR23078	PANTHER:PTHR23078:SF11	SMART:SM00382	SMART:SM01073	SUPFAM:SSF50692
SUPFAM:SSF52540	SUPFAM:SSF54585	UniParc:UPI0004EDD784	SEG:seg	:	:

Description

BnaC03g30040DBnaC03g30040D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G4C1]

Coordinates

chrLK032119:-:563836..569560

Molecular Weight (calculated)

78767.9 Da

IEP (calculated)

6.286

GRAVY (calculated)

-0.142

Length

714 amino acids

Sequence
(BLAST)

001: MAGRYGSQVM TMTVTNTPSA DLAFTNLAYC SSSDLRHIRD GSIALNAIQR RHGRVSTGDM VSVSRFVPPE NFELAMLTLE LEFVKKGTKS EQVDAALLST
101: QLKRKYINQV LTVGQKVTFE YHGTNYILTV NRADVEGQNQ SNGIERGMLS QDTYIVFEAS NASGIKIVNQ REAASSNIFK HKEFNLESLG IGGLGAEFAD
201: IFRRAFASRV FPPHVTSRLG IKHVKGMLLF GPPGTGKTLM ARQIGKMLNG KDPKIVNGPE VLSKFVGETE KNVRDLFADA EQDQRTLGDA SELHVIIFDE
301: IDAICKSRGS TRDGTGVHDS IVNQLLTKID GVEALNNVLL IGMTNRKDLL DEALLRPGRL EVQVEISLPD EAGRLQILQI HTNKMKENSF LGHDINLQEL
401: AARTKNYSGA ELEGVVKSAT SYALNRQLSM DDLTKPVEEE NIKITMEDFL HAIHEVQPAF GASTDDLERC RLNGMVDSGN RHNHIYKRAM LLVEQVKVST
501: RSPLVTCLLE GPSGSGKTAL AATVGIDSDF PYVKIVSAET MIGLHESTKC AHIVKVFEDA YKSPMSIIIL DDIERLLEYV AIGPRFSNII SQTLMVLLKR
601: LPPKGKKLLV FGTTSQLTFL DSVGICEAFS ITYSVPTLRT EDAKKVLKQF NVFSEDDVEA AAEALDDMPI KKLYMLIEMA AQGEYGGSAE AIYAGSEKIK
701: LTHFFDCLQD VVRF

Best Arabidopsis Sequence Match ( AT4G04910.1 )
(BLAST)

001: MAGRYGSQVM TMTVTNTPSA DLAFTNLAYC SSSDLRQFSV PGSDLFLANV ADSFILSLCG HGSIRDGNIA LNAIQRRHAR VSTGDMVSVS RFVPPENFDL
101: AMLTLELEFV KKGTKSEQVD AALLSTQLKR KYTNQVLTVG QKATFEYHGT NYILTVNRAD VEGQDHTNGI ERGLLSKDTY IVFEASNASG IKIVNQREAA
201: SSNIFKHKEF NLESLGIGGL GAEFADIFRR AFASRVFPPH VTSRLGIKHV KGMLLFGPPG TGKTLMARQI GKMLNGKDPK IVNGPEVLSK FVGETEKNVR
301: DLFADAEQDQ RTLGDASELH VIIFDEIDAI CKSRGSTRDG TGVHDSIVNQ LLTKIDGVEA LNNVLLIGMT NRKDLLDEAL LRPGRLEVQV EISLPDEAGR
401: LQILQIHTNK MKENSFLGTD INLQELAART KNYSGAELEG VVKSATSYAL NRQLSMDDLT KPVEEENIKI TMEDFLHAIY EVQPAFGAST DDLERCRLNG
501: MVDCGHRHNH IYKRAMLLVE QVKVSTRSPL VTCLLEGPSG SGKTALAATI GIDSDFPYVK IVSAETMIGL SESTKCAHIV KVFEDAYKSP MSIIILDDIE
601: RLLEFIAIGP RFSNIISQTL MVLLKRLPPK GKKLLVFGTT SEVTFLESVG ISDCFSVTHS VPTLQKEDAK KVLNQLNLFS EDDVDSAAEA LNDMPIKKIY
701: MLIEMAAQGE NGGSAEAIYA GREKININHF YDCLGDFIRF TG

Arabidopsis Description

NSFNSF [Source:UniProtKB/TrEMBL;Acc:A0A178UTB9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.