CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra015464.1-P	Field mustard	nucleus	99.92	98.26
CDY10163	Canola	nucleus	96.88	96.72
CDY06186	Canola	nucleus	92.08	91.01
CDY10003	Canola	nucleus	91.32	90.48
AT1G05910.1	Thale cress	nucleus	89.89	88.18
VIT_05s0102g00260.t01	Wine grape	nucleus	71.61	69.79
Solyc04g076180.2.1	Tomato	nucleus	69.67	69.26
KRH24642	Soybean	cytosol, nucleus	69.59	68.78
KRH29644	Soybean	nucleus	69.0	68.48
TraesCS5B01G299500.1	Wheat	nucleus	62.85	62.01
TraesCS5A01G302000.1	Wheat	nucleus	62.68	62.0
TraesCS5D01G306800.1	Wheat	nucleus	62.59	61.76
Zm00001d021145_P003	Maize	plasma membrane	61.92	61.66
EER97044	Sorghum	cytosol	62.09	61.57
HORVU5Hr1G078780.1	Barley	nucleus	62.51	61.27
GSMUA_Achr10P...	Banana	nucleus	55.35	61.06
Os09t0515100-02	Rice	cytosol	61.25	60.68
GSMUA_Achr11P...	Banana	nucleus	58.13	57.69
CDY39223	Canola	cytosol, mitochondrion	3.45	35.96
CDY09518	Canola	cytosol	9.18	23.8
CDY21320	Canola	plastid	11.79	19.61
CDX90880	Canola	plastid	11.96	19.37
CDY34435	Canola	cytosol	11.88	19.26
CDY16637	Canola	plastid	11.96	19.24
CDX86132	Canola	plastid	11.96	19.24
CDY32219	Canola	cytosol	11.63	18.7
CDX96221	Canola	cytosol	1.68	16.26
CDX75809	Canola	nucleus	20.81	13.4
CDX82447	Canola	nucleus	20.56	13.29

Protein Annotations

Gene3D:1.10.8.60	Gene3D:1.20.920.10	Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078I9T9	UniProt:A0A078I9T9
InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	InterPro:Bromodomain	InterPro:Bromodomain-like_sf	EnsemblPlants:CDY47705
ProteinID:CDY47705	ProteinID:CDY47705.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	EnsemblPlantsGene:GSBRNA2T00087970001	InterPro:IPR001487	InterPro:IPR036427	InterPro:P-loop_NTPase	PFAM:PF00004
PFAM:PF00439	PRINTS:PR00503	ScanProsite:PS00674	PFscan:PS50014	PANTHER:PTHR23069	PANTHER:PTHR23069:SF0
SMART:SM00297	SMART:SM00382	SUPFAM:SSF47370	SUPFAM:SSF52540	UniParc:UPI0004EE3980	SEG:seg

Description

BnaA10g03940DBnaA10g03940D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I9T9]

Coordinates

chrLK032731:+:41013..47043

Molecular Weight (calculated)

131322.0 Da

IEP (calculated)

5.702

GRAVY (calculated)

-0.595

Length

1187 amino acids

Sequence
(BLAST)

0001: MHPKGSSQGD GSDTKAVRSS DRLRRRPKLY GRSYYYYSPN LHNRKRNTKT RTAASQIAKM LHKGNKPARA SSATPVASDL RRSTRKRRLS VNLEDYTDSS
0101: GGEDEDMMSP AYRTLRSRVS NGVHRNRKAK ETESAPRREG LRPRRSKIIA NKRLKTESGA NQDSSEEKDG PEETENGNEL DDHDADDGED EVEAEDEDEE
0201: EDGDDDEDEE QEGRKRYDLR NRAEVRRMPT EEINKQQQPR SPRRVLHQGM GTRNGRDVRR GGSRLHKRHR FARTDDSDDS LLVDELDQGP AIPWARGGNR
0301: SGPPWLFGGL DTYGSSSLGL NAGASGWGHQ SDGLTALTSG VQTAGPSSKG GADIQPLQIN ENINFDDIGG LSEYINDLKE MVFFPLLYPE FFASYNITPP
0401: RGVLLCGPPG TGKTLIARAL ACAASKAGQK VSFYMRKGAD VLSKWVGEAE RQLKLLFEEA QRNQPSIIFF DEIDGLAPVR SSKQEQIHNS IVSTLLALMD
0501: GLDSRGQVVL IGATNRVDAI DGALRRPGRF DREFNFSLPG CEARAEILDI HTRKWKNPPS RELKEELAAS CVGYCGADLK ALCTEAAIRA FREKYPQVYT
0601: SDDKYAIDVG LVKVNKSHFV EAMSAITPAA HRGSVVQSRP LSPVVLPCLH RHLLGSMSLI SDIFPSSAMS SELTKLSMLS FGSAIPLVYR PRLLLLGGEG
0701: VGLDHLGPAI LHELEKFPIH SLGLPSLLSD PGAKTPEEAL VHIFSEARRT TPSILYIPMF NNWWENAHEQ LRAVFLTLLE ELPSNLPILL LATSYGELSD
0801: FEEQSVFDNR SVYTVDKLSG EDRSLFFDRL IEAALSVISG LNGKPDGPPF PELPKLPKEP TGPKPAEIKA KVEAEQHALR RLRMCLRDVC NRILYDKRFS
0901: AFHFPVTDED APNYRTIIQN PMDTATLLQR VDAGQYLTCS PFLQDVDLIV KNAKAYNGDD YAGARIVSRA YELRDVVHGM LAQMDPALLT YCDKIAAEGG
1001: PAQIPDDLSG SILGLAPVVQ MGTVTRSSAR LRNVQPEVNI DRDHEGLKKP KKTADAASTD SASDKPEHQD SDVEMTPLEA AKSNSSAPCS AEDPPRKEDE
1101: ACGEEVSGDC SQDSVKSDED MSSEIESVKG VLMERTESYS IPQMERIYTR IMKGVLETLD KGLGDDQSPK HSILRFLSEF AQLQANF

Best Arabidopsis Sequence Match ( AT1G05910.1 )
(BLAST)

0001: MHPKRSSQGD GSVTKPVRTS DRLRRRPKLH GRSYLYYSSP NMLHNRKRNT KTRTAASQIA KMLHKGNRPA RASNAAPIAS DLRRSTRKRR ISVNLEDYTD
0101: SSGAEDEDMM SPAYRTLRRR VHKNFSTSKS RKDMDAELAP RREGLRPRRS TTIANKRLKT ESGADQDTSE EKDGQDETEN GNELDDADDG ENEVEAEDEG
0201: NGEDEGDGED EGEEDGDDDE EGDEEQEGRK RYDLRNRAEV RRMPTGEINK QQQPRSPRRV LHQGMGTRVG RDGRRGGSRP HKRHRFTRTD DSDDSLLVDE
0301: LDQGPAIPWA RGGNRSGAPW LFGGLDTYGS SSLGLNVGAS GWGHQSDGLA ALTSGVQTAG PSSKGGADIQ PLQINEDINF DDIGGLSEYI NDLKEMVFFP
0401: LLYPEFFASY SITPPRGVLL CGPPGTGKTL IARALACAAS KAGQKVSFYM RKGADVLSKW VGEAERQLKL LFEEAQRNQP SIIFFDEIDG LAPVRSSKQE
0501: QIHNSIVSTL LALMDGLDSR GQVVLIGATN RVDAIDGALR RPGRFDREFN FSLPGCEARA EILDIHTRKW KHPPTRELKE ELAATCVGYC GADLKALCTE
0601: AAIRAFREKY PQVYTSDDKY AIDVGLVNVE KSHFVEAMSA ITPAAHRGSV VQSRPLSPVV LPCLHRHLLE SMSLISDIFP SSATSSELTK LSILTFGSAI
0701: PLVYRPRLLL LGGEGVGLDH LGPAILHELE KFPIHSLGLP SLLSDPGAKT PEEALVHIFS EARRTTPSIL YIPMFNNWWE NAHEQLRAVF LTLLEELPSN
0801: LPILLLATSY GELSDMEEQS VFDNRSVYTV DKPSSEDRSL FFDRLIEAAL SVISGLNGKP DGPQPLPELP KVPKEPTGPK PAEVKAKVEA EQHALRRLRM
0901: CLRDVCNRIL YDKRFSAFHF PVTDEDAPNY RSIIQIPMDT ATLLQRVDTG QYLTCTPFLQ DVDLIVRNAK AYNGDDYAGA RIVSRAYELR DVVHGMLSQM
1001: DPALLTYCDK IAAEGGPSLI PDDLSGSILG LAPVVQMGTV TRTSARLRNV QPEVNLDRDY EGLKKPKKTT DAVSIDSAAD KSQNQDSGQE MPSPDAANPQ
1101: SAAPSPTDGD REDQSEPPSK EASAEDMSGD SCKGPAAKSD KEISSRTESV KGVFMERTDN YSIPQMERLY TRIMKGVLET LDKGLRDDDN NPKHSILRFL
1201: SEFAQHQANF

Arabidopsis Description

ATPase family AAA domain-containing protein At1g05910 [Source:UniProtKB/Swiss-Prot;Acc:F4IAE9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.