Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_05s0102g00260.t01 | Wine grape | nucleus | 77.89 | 76.35 |
| KRH24642 | Soybean | cytosol, nucleus | 73.62 | 73.19 |
| KRH29644 | Soybean | nucleus | 72.36 | 72.24 |
| CDY47705 | Canola | nucleus | 69.26 | 69.67 |
| CDY10163 | Canola | nucleus | 69.26 | 69.55 |
| AT1G05910.1 | Thale cress | nucleus | 69.93 | 69.01 |
| Bra015464.1-P | Field mustard | nucleus | 69.51 | 68.77 |
| CDY06186 | Canola | nucleus | 68.26 | 67.86 |
| Bra032449.1-P | Field mustard | nucleus | 69.1 | 67.85 |
| CDY10003 | Canola | nucleus | 67.84 | 67.61 |
| GSMUA_Achr10P... | Banana | nucleus | 59.97 | 66.54 |
| EER97044 | Sorghum | cytosol | 65.49 | 65.33 |
| Zm00001d021145_P003 | Maize | plasma membrane | 65.16 | 65.27 |
| TraesCS5A01G302000.1 | Wheat | nucleus | 65.16 | 64.83 |
| TraesCS5B01G299500.1 | Wheat | nucleus | 65.16 | 64.67 |
| Os09t0515100-02 | Rice | cytosol | 64.82 | 64.61 |
| TraesCS5D01G306800.1 | Wheat | nucleus | 64.99 | 64.51 |
| HORVU5Hr1G078780.1 | Barley | nucleus | 64.91 | 64.0 |
| GSMUA_Achr11P... | Banana | nucleus | 62.56 | 62.46 |
| Solyc01g104920.2.1 | Tomato | plastid | 12.23 | 21.1 |
| Solyc07g062760.1.1 | Tomato | nucleus | 17.92 | 19.38 |
| Solyc01g104930.1.1 | Tomato | cytosol | 2.43 | 15.85 |
| Solyc07g062770.2.1 | Tomato | nucleus | 4.02 | 6.52 |
Protein Annotations
| Gene3D:1.10.8.60 | Gene3D:1.20.920.10 | Gene3D:3.40.50.300 | MapMan:35.1 | InterPro:AAA+_ATPase | InterPro:ATPase_AAA_CS |
| InterPro:ATPase_AAA_core | InterPro:Bromodomain | InterPro:Bromodomain-like_sf | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003682 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 | GO:GO:0016887 | GO:GO:0031936 |
| GO:GO:0040029 | GO:GO:0042393 | GO:GO:0045944 | GO:GO:0080111 | InterPro:IPR001487 | InterPro:IPR036427 |
| UniProt:K4BU56 | InterPro:P-loop_NTPase | PFAM:PF00004 | PFAM:PF00439 | PRINTS:PR00503 | ScanProsite:PS00674 |
| PFscan:PS50014 | PANTHER:PTHR23069 | PANTHER:PTHR23069:SF0 | SMART:SM00297 | SMART:SM00382 | SUPFAM:SSF47370 |
| SUPFAM:SSF52540 | EnsemblPlantsGene:Solyc04g076180.2 | EnsemblPlants:Solyc04g076180.2.1 | UniParc:UPI0002765A70 | SEG:seg | : |
Description
No Description!
Coordinates
chr4:+:61117413..61125461
Molecular Weight (calculated)
132511.0 Da
IEP (calculated)
6.224
GRAVY (calculated)
-0.591
Length
1194 amino acids
Sequence
(BLAST)
(BLAST)
0001: MYPKRSGQPD DAVSGPVRTS DRLRRRPTLY GRPYLYYNPK LIRPKRNKTK TRTAASQIAK MLRPGSRPVR TKKSDSVAAN LRRSTRTRRV SVNLEGYTDS
0101: SGTEDNDLMS PKYRSSRNRE DNNSASQDDL MPRREGLRPR RAGLRPRRAR AVGRQQLNLR SDDEQDTSEE KIGQGDPENE NDVDDNDADE AEDEGGGDGD
0201: GEDEGEDEGD EDGDDEEGEE QDGRRRYDLR NRAEVRRLSM EGVKQRPRSP RRVLQQGMGT KVNRDVRRGG SRVHKRHRMT RGDDSDDSLL VDELDEGPPI
0301: PWGRGGSRSG PPWLLGGLDM QGTTSWGLNV AASGWGHQSE AFTNLTSGIQ TAGPSSKGGA DIQPLQVDET ISFDDIGGLS EYIDALKEMV FFPLLYPDFF
0401: ASYNITPPRG VLLCGPPGTG KTLIARALAC AASKAGQKVS FYMRKGADVL SKWVGEAERQ LKLLFEEAQR NQPSIIFFDE IDGLAPVRSS KQEQIHNSIV
0501: STLLALMDGL DSRGQVVLIG ATNRVDAIDG ALRRPGRFDR EFNFPLPGLE ARAEILDIHT RKWKQPPSKE LKMELAASCV GYCGADLKAL CTEAAIRAFR
0601: EKYPQVYTSD DKFLIDVESV TVEKYHFLEA MTTITPAAHR GSIVHSRPLS SVVAPCLHGP LRKAMSIISD IFPLSVSSEL SKLSMLSYGS AIPLVYRPRL
0701: LLCGGEGVGL DHVGPAILHE LEKFPVHSLG LPSLLSDPGA KTPEEALVHI FSEARRTTPS ILYLPHFHLW WENAHEQLKA VLRTLLEELP SDLPILLFGT
0801: SSVPLSDLPD EPSSVFSHHS ILCLDSPSDE DRSLFFDRLI EAALSIQVEA TTKKSDKSDS LPELPKAPKV SVGPKASELK AKAEAEGHAL RRLRMCLRDV
0901: CNRILYDKRF SVFHYPVMDE DAPNYRLIIQ NPMDMATLLQ HVDSGKYITN KTFLEDFDLI VTNAKKYNGD DYNGARIVSR AHELRDSVYG MLSQMDPALV
1001: AFCEKIAAEG GPVSVPDELG GDALPQNPVL QSSTLTRARA RLRNVQPEVN LDQSFEALRR HKKHADSAQL VLDDELQPQD SLPSKSSNDH EGDASDQRPE
1101: STLADGNKSA DVPDASGDAC QDVTMSDTEM SRKIESVKKQ FVKHTKEYGI PQLERLYTRI MKGVFETKTG VTNEDLKTSI LSFLLKFAKD ASKF
0101: SGTEDNDLMS PKYRSSRNRE DNNSASQDDL MPRREGLRPR RAGLRPRRAR AVGRQQLNLR SDDEQDTSEE KIGQGDPENE NDVDDNDADE AEDEGGGDGD
0201: GEDEGEDEGD EDGDDEEGEE QDGRRRYDLR NRAEVRRLSM EGVKQRPRSP RRVLQQGMGT KVNRDVRRGG SRVHKRHRMT RGDDSDDSLL VDELDEGPPI
0301: PWGRGGSRSG PPWLLGGLDM QGTTSWGLNV AASGWGHQSE AFTNLTSGIQ TAGPSSKGGA DIQPLQVDET ISFDDIGGLS EYIDALKEMV FFPLLYPDFF
0401: ASYNITPPRG VLLCGPPGTG KTLIARALAC AASKAGQKVS FYMRKGADVL SKWVGEAERQ LKLLFEEAQR NQPSIIFFDE IDGLAPVRSS KQEQIHNSIV
0501: STLLALMDGL DSRGQVVLIG ATNRVDAIDG ALRRPGRFDR EFNFPLPGLE ARAEILDIHT RKWKQPPSKE LKMELAASCV GYCGADLKAL CTEAAIRAFR
0601: EKYPQVYTSD DKFLIDVESV TVEKYHFLEA MTTITPAAHR GSIVHSRPLS SVVAPCLHGP LRKAMSIISD IFPLSVSSEL SKLSMLSYGS AIPLVYRPRL
0701: LLCGGEGVGL DHVGPAILHE LEKFPVHSLG LPSLLSDPGA KTPEEALVHI FSEARRTTPS ILYLPHFHLW WENAHEQLKA VLRTLLEELP SDLPILLFGT
0801: SSVPLSDLPD EPSSVFSHHS ILCLDSPSDE DRSLFFDRLI EAALSIQVEA TTKKSDKSDS LPELPKAPKV SVGPKASELK AKAEAEGHAL RRLRMCLRDV
0901: CNRILYDKRF SVFHYPVMDE DAPNYRLIIQ NPMDMATLLQ HVDSGKYITN KTFLEDFDLI VTNAKKYNGD DYNGARIVSR AHELRDSVYG MLSQMDPALV
1001: AFCEKIAAEG GPVSVPDELG GDALPQNPVL QSSTLTRARA RLRNVQPEVN LDQSFEALRR HKKHADSAQL VLDDELQPQD SLPSKSSNDH EGDASDQRPE
1101: STLADGNKSA DVPDASGDAC QDVTMSDTEM SRKIESVKKQ FVKHTKEYGI PQLERLYTRI MKGVFETKTG VTNEDLKTSI LSFLLKFAKD ASKF
0001: MHPKRSSQGD GSVTKPVRTS DRLRRRPKLH GRSYLYYSSP NMLHNRKRNT KTRTAASQIA KMLHKGNRPA RASNAAPIAS DLRRSTRKRR ISVNLEDYTD
0101: SSGAEDEDMM SPAYRTLRRR VHKNFSTSKS RKDMDAELAP RREGLRPRRS TTIANKRLKT ESGADQDTSE EKDGQDETEN GNELDDADDG ENEVEAEDEG
0201: NGEDEGDGED EGEEDGDDDE EGDEEQEGRK RYDLRNRAEV RRMPTGEINK QQQPRSPRRV LHQGMGTRVG RDGRRGGSRP HKRHRFTRTD DSDDSLLVDE
0301: LDQGPAIPWA RGGNRSGAPW LFGGLDTYGS SSLGLNVGAS GWGHQSDGLA ALTSGVQTAG PSSKGGADIQ PLQINEDINF DDIGGLSEYI NDLKEMVFFP
0401: LLYPEFFASY SITPPRGVLL CGPPGTGKTL IARALACAAS KAGQKVSFYM RKGADVLSKW VGEAERQLKL LFEEAQRNQP SIIFFDEIDG LAPVRSSKQE
0501: QIHNSIVSTL LALMDGLDSR GQVVLIGATN RVDAIDGALR RPGRFDREFN FSLPGCEARA EILDIHTRKW KHPPTRELKE ELAATCVGYC GADLKALCTE
0601: AAIRAFREKY PQVYTSDDKY AIDVGLVNVE KSHFVEAMSA ITPAAHRGSV VQSRPLSPVV LPCLHRHLLE SMSLISDIFP SSATSSELTK LSILTFGSAI
0701: PLVYRPRLLL LGGEGVGLDH LGPAILHELE KFPIHSLGLP SLLSDPGAKT PEEALVHIFS EARRTTPSIL YIPMFNNWWE NAHEQLRAVF LTLLEELPSN
0801: LPILLLATSY GELSDMEEQS VFDNRSVYTV DKPSSEDRSL FFDRLIEAAL SVISGLNGKP DGPQPLPELP KVPKEPTGPK PAEVKAKVEA EQHALRRLRM
0901: CLRDVCNRIL YDKRFSAFHF PVTDEDAPNY RSIIQIPMDT ATLLQRVDTG QYLTCTPFLQ DVDLIVRNAK AYNGDDYAGA RIVSRAYELR DVVHGMLSQM
1001: DPALLTYCDK IAAEGGPSLI PDDLSGSILG LAPVVQMGTV TRTSARLRNV QPEVNLDRDY EGLKKPKKTT DAVSIDSAAD KSQNQDSGQE MPSPDAANPQ
1101: SAAPSPTDGD REDQSEPPSK EASAEDMSGD SCKGPAAKSD KEISSRTESV KGVFMERTDN YSIPQMERLY TRIMKGVLET LDKGLRDDDN NPKHSILRFL
1201: SEFAQHQANF
0101: SSGAEDEDMM SPAYRTLRRR VHKNFSTSKS RKDMDAELAP RREGLRPRRS TTIANKRLKT ESGADQDTSE EKDGQDETEN GNELDDADDG ENEVEAEDEG
0201: NGEDEGDGED EGEEDGDDDE EGDEEQEGRK RYDLRNRAEV RRMPTGEINK QQQPRSPRRV LHQGMGTRVG RDGRRGGSRP HKRHRFTRTD DSDDSLLVDE
0301: LDQGPAIPWA RGGNRSGAPW LFGGLDTYGS SSLGLNVGAS GWGHQSDGLA ALTSGVQTAG PSSKGGADIQ PLQINEDINF DDIGGLSEYI NDLKEMVFFP
0401: LLYPEFFASY SITPPRGVLL CGPPGTGKTL IARALACAAS KAGQKVSFYM RKGADVLSKW VGEAERQLKL LFEEAQRNQP SIIFFDEIDG LAPVRSSKQE
0501: QIHNSIVSTL LALMDGLDSR GQVVLIGATN RVDAIDGALR RPGRFDREFN FSLPGCEARA EILDIHTRKW KHPPTRELKE ELAATCVGYC GADLKALCTE
0601: AAIRAFREKY PQVYTSDDKY AIDVGLVNVE KSHFVEAMSA ITPAAHRGSV VQSRPLSPVV LPCLHRHLLE SMSLISDIFP SSATSSELTK LSILTFGSAI
0701: PLVYRPRLLL LGGEGVGLDH LGPAILHELE KFPIHSLGLP SLLSDPGAKT PEEALVHIFS EARRTTPSIL YIPMFNNWWE NAHEQLRAVF LTLLEELPSN
0801: LPILLLATSY GELSDMEEQS VFDNRSVYTV DKPSSEDRSL FFDRLIEAAL SVISGLNGKP DGPQPLPELP KVPKEPTGPK PAEVKAKVEA EQHALRRLRM
0901: CLRDVCNRIL YDKRFSAFHF PVTDEDAPNY RSIIQIPMDT ATLLQRVDTG QYLTCTPFLQ DVDLIVRNAK AYNGDDYAGA RIVSRAYELR DVVHGMLSQM
1001: DPALLTYCDK IAAEGGPSLI PDDLSGSILG LAPVVQMGTV TRTSARLRNV QPEVNLDRDY EGLKKPKKTT DAVSIDSAAD KSQNQDSGQE MPSPDAANPQ
1101: SAAPSPTDGD REDQSEPPSK EASAEDMSGD SCKGPAAKSD KEISSRTESV KGVFMERTDN YSIPQMERLY TRIMKGVLET LDKGLRDDDN NPKHSILRFL
1201: SEFAQHQANF
Arabidopsis Description
ATPase family AAA domain-containing protein At1g05910 [Source:UniProtKB/Swiss-Prot;Acc:F4IAE9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.