Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400032278 | Potato | cytosol, mitochondrion, nucleus | 82.97 | 49.86 |
| Zm00001d043928_P001 | Maize | cytosol, nucleus, plastid | 36.23 | 43.57 |
| VIT_19s0014g02080.t01 | Wine grape | cytosol, plastid | 50.45 | 29.1 |
| KRH22028 | Soybean | nucleus | 47.28 | 27.97 |
| KRH27288 | Soybean | nucleus | 45.29 | 27.55 |
| GSMUA_Achr1P13870_001 | Banana | nucleus, plastid | 43.66 | 27.23 |
| CDX82447 | Canola | nucleus | 44.29 | 26.63 |
| CDX75809 | Canola | nucleus | 44.29 | 26.53 |
| OQU87303 | Sorghum | cytosol | 40.4 | 26.45 |
| HORVU3Hr1G061240.1 | Barley | cytosol | 43.57 | 26.14 |
| TraesCS3A01G246500.2 | Wheat | cytosol | 43.3 | 25.95 |
| TraesCS3B01G272900.1 | Wheat | cytosol | 43.48 | 25.93 |
| Bra001584.1-P | Field mustard | nucleus | 44.29 | 25.83 |
| Zm00001d043927_P001 | Maize | plastid | 42.3 | 25.52 |
| AT3G15120.2 | Thale cress | cytosol | 44.38 | 24.95 |
| TraesCS3D01G245000.1 | Wheat | cytosol | 43.66 | 23.91 |
| Solyc04g076180.2.1 | Tomato | nucleus | 19.38 | 17.92 |
| Solyc01g104920.2.1 | Tomato | plastid | 10.24 | 16.33 |
| Solyc01g104930.1.1 | Tomato | cytosol | 2.17 | 13.11 |
| Solyc07g062770.2.1 | Tomato | nucleus | 4.44 | 6.66 |
Protein Annotations
| Gene3D:1.10.8.60 | MapMan:14.3.1.1 | Gene3D:3.30.40.10 | Gene3D:3.40.50.300 | InterPro:AAA+_ATPase | InterPro:ATPase_AAA_CS |
| InterPro:ATPase_AAA_core | ncoils:Coil | InterPro:EPHD | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003682 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 | GO:GO:0016887 | GO:GO:0031936 | GO:GO:0040029 |
| GO:GO:0042393 | GO:GO:0045944 | GO:GO:0046872 | InterPro:IPR013083 | InterPro:IPR034732 | UniProt:K4CGV9 |
| InterPro:P-loop_NTPase | PFAM:PF00004 | PFAM:PF13771 | ScanProsite:PS00674 | PFscan:PS51805 | PANTHER:PTHR23069 |
| PANTHER:PTHR23069:SF3 | SMART:SM00382 | SUPFAM:SSF52540 | EnsemblPlantsGene:Solyc07g062760.1 | EnsemblPlants:Solyc07g062760.1.1 | UniParc:UPI000276BA41 |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr7:+:65449764..65454221
Molecular Weight (calculated)
123116.0 Da
IEP (calculated)
7.276
GRAVY (calculated)
-0.524
Length
1104 amino acids
Sequence
(BLAST)
(BLAST)
0001: MRFSRIASFE RSRSDTKLVY SRARKKHKRL DEVCEETYNQ NHNGVDKVET SEWNGEESEV ELRRSSRVRK APVVLDASPH PARKRQKIDR SGVRSSSRLE
0101: KGDMVKVESP CSTSNHLEEG TSAWGLRLRA RSKRMNNRVR NSVDSSPVGK RKIFQDVDEL KEETELEVAE LDKEEDSECE KSTIVKSKRP GRIKASNVRV
0201: TEQQETGTGG GVEDGKMIDQ EELLHVRDET DDSISTTRFK EGVEDGNVAL PLDNEDKAQL ETCVEPEEFH TADQVSMLEQ DLQRRNEMSV WVNDQKDGVE
0301: GGLLPNDEKD EGTEKEAQDE VDRVDFAQEK DGGTEKQAEV EVDRVDYAQE KDEGVFSDKA LEMEKVVKKE CPSDNNLRKR RIREGRHCGL CGGGTDGKPP
0401: KKLVYGAASD DEERSGSSAS DEPNYDMWDG FGDEPGWLGR LLGPINDRYG IAGIWVHQQC AVWSPEVYFA GLGCLKNVRA ALCRGRVLKC SRCGRPGATI
0501: GCRVDRCPKT YHLPCARANG CIFDHRKFLI ACTDHRHLFQ PYGSNYLQRI KKLKARKMKF ELRKLSNEAL RKDVDAEEKW LENCGEDEEF LKRESKRLHR
0601: DLLRIAPVYI GGSNSDAGVQ FQGWDSVAGL HDVIQCMKEV VILPLLYPEL FSSLGLTPPR GVLLHGYPGT GKTLIVRALI GSCARGDKRI AYFARKGADC
0701: LGKYVGDAER QLRLLFQVAE KSQPSVIFFD EIDGLAPCRG RQQDQTHSSV VSTLLALMDG LKSRGSVVVI GATNRPDAVD PALRRPGRFD REIYFPLPSV
0801: KDRESILSLH TKKWPKPVSG PVLKWIASKT VGFAGADLQA LCTQAAIIAL KRSFPLHKRL SAVVKVPNAS CPPLPNFKVE ERDWVEALTC APPPCSRREA
0901: GMVANDVVSA PLHTFLVPCL LQPLSRLIVS LYLDERLWLP PLLFKAAEFV KDVVLSAMVE KKLPSNNWQS YVNDLLQEPD VISQIENHFV RANILDGDAN
1001: IGGFDAVDDG IVHGLSNSQP SKLQLAGARP KLLKNIFHMA GNKSGFRILI SGNPRSGQRH LASSLLHCFV GNVDVQKVDL ATISQEGHGD IIQGLTQILS
1101: FATS
0101: KGDMVKVESP CSTSNHLEEG TSAWGLRLRA RSKRMNNRVR NSVDSSPVGK RKIFQDVDEL KEETELEVAE LDKEEDSECE KSTIVKSKRP GRIKASNVRV
0201: TEQQETGTGG GVEDGKMIDQ EELLHVRDET DDSISTTRFK EGVEDGNVAL PLDNEDKAQL ETCVEPEEFH TADQVSMLEQ DLQRRNEMSV WVNDQKDGVE
0301: GGLLPNDEKD EGTEKEAQDE VDRVDFAQEK DGGTEKQAEV EVDRVDYAQE KDEGVFSDKA LEMEKVVKKE CPSDNNLRKR RIREGRHCGL CGGGTDGKPP
0401: KKLVYGAASD DEERSGSSAS DEPNYDMWDG FGDEPGWLGR LLGPINDRYG IAGIWVHQQC AVWSPEVYFA GLGCLKNVRA ALCRGRVLKC SRCGRPGATI
0501: GCRVDRCPKT YHLPCARANG CIFDHRKFLI ACTDHRHLFQ PYGSNYLQRI KKLKARKMKF ELRKLSNEAL RKDVDAEEKW LENCGEDEEF LKRESKRLHR
0601: DLLRIAPVYI GGSNSDAGVQ FQGWDSVAGL HDVIQCMKEV VILPLLYPEL FSSLGLTPPR GVLLHGYPGT GKTLIVRALI GSCARGDKRI AYFARKGADC
0701: LGKYVGDAER QLRLLFQVAE KSQPSVIFFD EIDGLAPCRG RQQDQTHSSV VSTLLALMDG LKSRGSVVVI GATNRPDAVD PALRRPGRFD REIYFPLPSV
0801: KDRESILSLH TKKWPKPVSG PVLKWIASKT VGFAGADLQA LCTQAAIIAL KRSFPLHKRL SAVVKVPNAS CPPLPNFKVE ERDWVEALTC APPPCSRREA
0901: GMVANDVVSA PLHTFLVPCL LQPLSRLIVS LYLDERLWLP PLLFKAAEFV KDVVLSAMVE KKLPSNNWQS YVNDLLQEPD VISQIENHFV RANILDGDAN
1001: IGGFDAVDDG IVHGLSNSQP SKLQLAGARP KLLKNIFHMA GNKSGFRILI SGNPRSGQRH LASSLLHCFV GNVDVQKVDL ATISQEGHGD IIQGLTQILS
1101: FATS
0001: MKSSHEVTKN HSGSPSGKKS KKLAAICEEE YKKNHGESQD RDGGSGLACA DSELRRSSRV RKIPSILDAS PPPPKKRQRF NKSSSSIEKG KRNEDGDSDA
0101: PDGWKSRLRS RRKKNVGFQA SGRQRRVVKG KRKLVFRNRA CELSEKAEAS DREEEKGALK GGKLNKAKKP VDVKESESSE DGGKESDTSN SEDVQKESDT
0201: SNSEDESASE SEESMQADSA AREKYQEKKA TKRSVFLESE NEAEVDRTET ESEDGTDSTD NEIDDSDEEG ESETQCSAEK TGSETEANVE EMRADTNVTM
0301: EAVQNESRNQ MEELENEIEM GVEDEKKEMS VIVSESGNGT GIREDENKEM DVIVSESGNG TGILEGENKK MEVMVSGSGN GTGIREDDSD FAAKVKNREG
0401: DTLHPELLGE ASTEINESLK QNDDIGEQGV SRTPSNNKTK EHNEFLDRGG ESVEMPDELP IQNETCKKAV DSVSTSSDRL GKPLFKQTRR CGLCGVGTDG
0501: KLPKKLMQDN GDSDVEAPSG SSSSEEQKYD ILDGFGDDPG WLGRLLGPIN DRYGISGTWV HQNCAVWSPE VYFAGVGCLK NIRAALFRGR SLKCTRCDRP
0601: GATTGCRVDR CPRTYHLPCA RANGCIFDHR KFLIACTDHR HHFQPHGRQC QVRMTKMKTK RMRLEMKKHS NDAWRKDVEA EEKWFEKCGE DEEFLKRESK
0701: RLHRDLLRVA PEYIGGSDSE SGKAFEGWDS VAGLEGVTQC MKEVVLIPLL YPEFFDNLGL TPPRGILLHG HPGTGKTLVV RALIGSLARG NRRIAYFARK
0801: GADCLGKYVG DAERQLRLLF QVAEKCQPSI IFFDEIDGLA PKRSRQQDQT HSSVVSTLLA LLDGLKSRGS VVVIGATNYP DAIDPALRRP GRFDREIYFP
0901: LPSVDDRAAI ISLHTRKWPK PVSGYLLKWI AKETAGFAGA DIQALCTQAA MIALNRSFPL QESLAAAELG VSSSNRAALP SFSVEERDWL EALSRSPPPC
1001: SRRGAGIAAS DIFSSPLPTY LVPSLLPPLC SLLVALHLDE RIFLPPLLSK AAVDVQNVIR SALSDKKITE GCWWSHVDTL LHEVDVVKDI VQRLSCTGIL
1101: DGGCDLVGSV ASIPGTGDCS LGSAKFMVPR VCRHPGVLGN ASVESTSKSG FQLLIAGGPK SGQRHLASCV LHCFIGNAEM LKIDTATISQ EGNGDLVLGV
1201: THLLIKCASK KSCVVFMPRV DLWAVKTETP LNEEVECDDD SVQENCSEMG EEKALQNGVR VSHAWNTFFE QVETLRVSTK MMILATSGMP YKLLPPKIQQ
1301: FFKTDLSKEC QPTMSEAVPQ FNVQVVESSD QDIAIDLSAT ELLRRAIQVF LHLVHQGSHT HCGLKKKYKG EDLDQGCRDA APQNNTDHRA GEEAVVKSKR
1401: LDDGSLKVPP LPININVKPK SSLQLAVSTF GYQILQYPQF AELCWVTSKL KEGPSADVSG PWRGWPFNSC ITRPCNSSEQ TITSSDSNNV KGKDSTGIVR
1501: GLTAVGLSAY RGTYISLREV SFEVRKVLEL LVGRISVKIN AGKDRCRYIR ILSQVAYLED LVNSWVYAMR SFESTTQTES TNPLPCSVVN PSVRNEPTEQ
1601: GTSDQLKGSE EDLKEDTQNM NCPDPIASSN LTDNHQPVVE IANGHNGTNH ESFLEDTGHL TTHSTDGLTL VKENVDVISD TEMMIEDSGV NPFRQAVLLD
1701: LNSPAADHEQ NETPHGSCEV ETTGTVISLQ EKADSLDNPN GSGDSNSISL EDPHKSADSN NGKAWDGVHG LESANNMPEP VEQVETTGRT NPQDDPSLVC
1801: LYRCCSQCVS ILQDSMHKLV TRELRLGRSS ITTEGIHDAV SSLSVELISA VRKFISVKNN GTMQEAKVKD HEECPENEAC FCKRLSGNFL ASVECCSHSA
1901: EMQGSLDEGN TYRRPKTWLE PVFVFKDGIL VPVSTEDDRS LHCKYDSFCL GSLIELIATE MKPF
0101: PDGWKSRLRS RRKKNVGFQA SGRQRRVVKG KRKLVFRNRA CELSEKAEAS DREEEKGALK GGKLNKAKKP VDVKESESSE DGGKESDTSN SEDVQKESDT
0201: SNSEDESASE SEESMQADSA AREKYQEKKA TKRSVFLESE NEAEVDRTET ESEDGTDSTD NEIDDSDEEG ESETQCSAEK TGSETEANVE EMRADTNVTM
0301: EAVQNESRNQ MEELENEIEM GVEDEKKEMS VIVSESGNGT GIREDENKEM DVIVSESGNG TGILEGENKK MEVMVSGSGN GTGIREDDSD FAAKVKNREG
0401: DTLHPELLGE ASTEINESLK QNDDIGEQGV SRTPSNNKTK EHNEFLDRGG ESVEMPDELP IQNETCKKAV DSVSTSSDRL GKPLFKQTRR CGLCGVGTDG
0501: KLPKKLMQDN GDSDVEAPSG SSSSEEQKYD ILDGFGDDPG WLGRLLGPIN DRYGISGTWV HQNCAVWSPE VYFAGVGCLK NIRAALFRGR SLKCTRCDRP
0601: GATTGCRVDR CPRTYHLPCA RANGCIFDHR KFLIACTDHR HHFQPHGRQC QVRMTKMKTK RMRLEMKKHS NDAWRKDVEA EEKWFEKCGE DEEFLKRESK
0701: RLHRDLLRVA PEYIGGSDSE SGKAFEGWDS VAGLEGVTQC MKEVVLIPLL YPEFFDNLGL TPPRGILLHG HPGTGKTLVV RALIGSLARG NRRIAYFARK
0801: GADCLGKYVG DAERQLRLLF QVAEKCQPSI IFFDEIDGLA PKRSRQQDQT HSSVVSTLLA LLDGLKSRGS VVVIGATNYP DAIDPALRRP GRFDREIYFP
0901: LPSVDDRAAI ISLHTRKWPK PVSGYLLKWI AKETAGFAGA DIQALCTQAA MIALNRSFPL QESLAAAELG VSSSNRAALP SFSVEERDWL EALSRSPPPC
1001: SRRGAGIAAS DIFSSPLPTY LVPSLLPPLC SLLVALHLDE RIFLPPLLSK AAVDVQNVIR SALSDKKITE GCWWSHVDTL LHEVDVVKDI VQRLSCTGIL
1101: DGGCDLVGSV ASIPGTGDCS LGSAKFMVPR VCRHPGVLGN ASVESTSKSG FQLLIAGGPK SGQRHLASCV LHCFIGNAEM LKIDTATISQ EGNGDLVLGV
1201: THLLIKCASK KSCVVFMPRV DLWAVKTETP LNEEVECDDD SVQENCSEMG EEKALQNGVR VSHAWNTFFE QVETLRVSTK MMILATSGMP YKLLPPKIQQ
1301: FFKTDLSKEC QPTMSEAVPQ FNVQVVESSD QDIAIDLSAT ELLRRAIQVF LHLVHQGSHT HCGLKKKYKG EDLDQGCRDA APQNNTDHRA GEEAVVKSKR
1401: LDDGSLKVPP LPININVKPK SSLQLAVSTF GYQILQYPQF AELCWVTSKL KEGPSADVSG PWRGWPFNSC ITRPCNSSEQ TITSSDSNNV KGKDSTGIVR
1501: GLTAVGLSAY RGTYISLREV SFEVRKVLEL LVGRISVKIN AGKDRCRYIR ILSQVAYLED LVNSWVYAMR SFESTTQTES TNPLPCSVVN PSVRNEPTEQ
1601: GTSDQLKGSE EDLKEDTQNM NCPDPIASSN LTDNHQPVVE IANGHNGTNH ESFLEDTGHL TTHSTDGLTL VKENVDVISD TEMMIEDSGV NPFRQAVLLD
1701: LNSPAADHEQ NETPHGSCEV ETTGTVISLQ EKADSLDNPN GSGDSNSISL EDPHKSADSN NGKAWDGVHG LESANNMPEP VEQVETTGRT NPQDDPSLVC
1801: LYRCCSQCVS ILQDSMHKLV TRELRLGRSS ITTEGIHDAV SSLSVELISA VRKFISVKNN GTMQEAKVKD HEECPENEAC FCKRLSGNFL ASVECCSHSA
1901: EMQGSLDEGN TYRRPKTWLE PVFVFKDGIL VPVSTEDDRS LHCKYDSFCL GSLIELIATE MKPF
Arabidopsis Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LIM2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.