Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- cytosol 3
- endoplasmic reticulum 5
- plastid 2
- extracellular 3
- vacuole 3
- plasma membrane 3
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
20363867
nucleus: 25464976 plastid: 26371478 unclear: 26455813 extracellular: 29876421 |
msms PMID:
20363867
doi
Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID:
26371478
doi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
msms PMID:
26455813
doi
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400076472 | Potato | cytosol | 93.93 | 82.28 |
| VIT_19s0014g02750.t01 | Wine grape | cytosol | 84.25 | 78.89 |
| KRH20460 | Soybean | endoplasmic reticulum | 81.21 | 75.74 |
| KRH50033 | Soybean | endoplasmic reticulum, nucleus | 81.5 | 75.6 |
| Solyc01g104930.1.1 | Tomato | cytosol | 19.22 | 72.68 |
| Zm00001d038808_P001 | Maize | cytosol | 77.02 | 71.93 |
| EER93779 | Sorghum | cytosol | 77.02 | 71.74 |
| Os05t0519400-01 | Rice | plasma membrane | 76.45 | 71.2 |
| TraesCS1B01G352200.2 | Wheat | cytosol, mitochondrion | 75.43 | 70.26 |
| TraesCS1D01G341900.2 | Wheat | cytosol | 75.43 | 70.07 |
| TraesCS1A01G339900.1 | Wheat | unclear | 75.43 | 69.88 |
| Zm00001d051286_P013 | Maize | cytosol | 76.01 | 69.21 |
| HORVU1Hr1G076180.22 | Barley | cytosol | 75.29 | 65.53 |
| KRH24495 | Soybean | cytosol | 18.35 | 54.27 |
| Zm00001d000156_P001 | Maize | cytosol | 19.51 | 31.69 |
| Solyc04g076180.2.1 | Tomato | nucleus | 21.1 | 12.23 |
| Solyc07g062760.1.1 | Tomato | nucleus | 16.33 | 10.24 |
| Solyc07g062770.2.1 | Tomato | nucleus | 6.5 | 6.11 |
Protein Annotations
| Gene3D:1.10.8.60 | Gene3D:3.10.330.10 | Gene3D:3.40.50.300 | MapMan:50.3.6 | InterPro:AAA+_ATPase | InterPro:ATPase_AAA_CS |
| InterPro:ATPase_AAA_core | InterPro:Asp_de-COase-like_dom_sf | InterPro:CDC48_domain_2-like_sf | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 |
| GO:GO:0005794 | GO:GO:0005886 | GO:GO:0009506 | GO:GO:0016020 | UniProt:K4B264 | InterPro:P-loop_NTPase |
| PFAM:PF00004 | ScanProsite:PS00674 | PANTHER:PTHR23078 | PANTHER:PTHR23078:SF11 | SMART:SM00382 | SUPFAM:SSF50692 |
| SUPFAM:SSF52540 | SUPFAM:SSF54585 | SignalP:SignalP-noTM | EnsemblPlantsGene:Solyc01g104920.2 | EnsemblPlants:Solyc01g104920.2.1 | UniParc:UPI0002768B92 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr1:-:93243829..93252496
Molecular Weight (calculated)
76028.5 Da
IEP (calculated)
6.037
GRAVY (calculated)
-0.159
Length
692 amino acids
Sequence
(BLAST)
(BLAST)
001: MHSSLMLLFS LFAHDAIPNG QLGLNAIQRR YAKVSTGDAI SVSRFIPPED FNLALLTLDL EFVKKGTKEE QVDAVSLANQ VRKRFANQIM TTGQKVTLEF
101: HGNGYIVTVN QATVEGQEKS NVERGMVSAD TYIIFEAANS SGIKIVNQRE AASSSIFRQK EFNLESLGIG GLGAEFSDIF RRAFASRVFP PHVTSKLGIK
201: HVKGMLLHGP PGTGKTLMAR QIGKMLNGKE PKIVNGPEVL SKFVGETEKN VRDLFADAEQ DQKTKGDQSE LHVIIFDEID AICKSRGSTR DGTGVHDSIV
301: NQLLTKIDGV ESLNNVLLIG MTNRKDLLDE ALMRPGRLEV QVEISLPDEN GRLQILQIHT NKMKENSFLS PDVNLQELAA RTKNYSGAEL EGVVKSAVSY
401: ALNRQLSMDD LTKPVDEESI KVTMDDFLHA INEVRPAFGA STDDLERCRL NGIVDCGERH QHIYRRTMLL AEQVKVSRGS PLITCLLEGP SGSGKTAMAA
501: TVGIESDFPY VKIISAETMI GLSESSKCSQ IVKVFEDAYK SPLSIVVLDG IERLLEYVPI GPRFSNLISQ TLMVLLKRLP PKGKKILVIG TTSESGFLES
601: VGLSDAFSVT YHVPTLKTED AKKVLQQLDV FASDDVDSAA EALNDMPIKK LYMVVEMAAQ GEHGGTAEAI YSGKEKINIA HFYDCLQDIV RY
101: HGNGYIVTVN QATVEGQEKS NVERGMVSAD TYIIFEAANS SGIKIVNQRE AASSSIFRQK EFNLESLGIG GLGAEFSDIF RRAFASRVFP PHVTSKLGIK
201: HVKGMLLHGP PGTGKTLMAR QIGKMLNGKE PKIVNGPEVL SKFVGETEKN VRDLFADAEQ DQKTKGDQSE LHVIIFDEID AICKSRGSTR DGTGVHDSIV
301: NQLLTKIDGV ESLNNVLLIG MTNRKDLLDE ALMRPGRLEV QVEISLPDEN GRLQILQIHT NKMKENSFLS PDVNLQELAA RTKNYSGAEL EGVVKSAVSY
401: ALNRQLSMDD LTKPVDEESI KVTMDDFLHA INEVRPAFGA STDDLERCRL NGIVDCGERH QHIYRRTMLL AEQVKVSRGS PLITCLLEGP SGSGKTAMAA
501: TVGIESDFPY VKIISAETMI GLSESSKCSQ IVKVFEDAYK SPLSIVVLDG IERLLEYVPI GPRFSNLISQ TLMVLLKRLP PKGKKILVIG TTSESGFLES
601: VGLSDAFSVT YHVPTLKTED AKKVLQQLDV FASDDVDSAA EALNDMPIKK LYMVVEMAAQ GEHGGTAEAI YSGKEKINIA HFYDCLQDIV RY
001: MAGRYGSQVM TMTVTNTPSA DLAFTNLAYC SSSDLRQFSV PGSDLFLANV ADSFILSLCG HGSIRDGNIA LNAIQRRHAR VSTGDMVSVS RFVPPENFDL
101: AMLTLELEFV KKGTKSEQVD AALLSTQLKR KYTNQVLTVG QKATFEYHGT NYILTVNRAD VEGQDHTNGI ERGLLSKDTY IVFEASNASG IKIVNQREAA
201: SSNIFKHKEF NLESLGIGGL GAEFADIFRR AFASRVFPPH VTSRLGIKHV KGMLLFGPPG TGKTLMARQI GKMLNGKDPK IVNGPEVLSK FVGETEKNVR
301: DLFADAEQDQ RTLGDASELH VIIFDEIDAI CKSRGSTRDG TGVHDSIVNQ LLTKIDGVEA LNNVLLIGMT NRKDLLDEAL LRPGRLEVQV EISLPDEAGR
401: LQILQIHTNK MKENSFLGTD INLQELAART KNYSGAELEG VVKSATSYAL NRQLSMDDLT KPVEEENIKI TMEDFLHAIY EVQPAFGAST DDLERCRLNG
501: MVDCGHRHNH IYKRAMLLVE QVKVSTRSPL VTCLLEGPSG SGKTALAATI GIDSDFPYVK IVSAETMIGL SESTKCAHIV KVFEDAYKSP MSIIILDDIE
601: RLLEFIAIGP RFSNIISQTL MVLLKRLPPK GKKLLVFGTT SEVTFLESVG ISDCFSVTHS VPTLQKEDAK KVLNQLNLFS EDDVDSAAEA LNDMPIKKIY
701: MLIEMAAQGE NGGSAEAIYA GREKININHF YDCLGDFIRF TG
101: AMLTLELEFV KKGTKSEQVD AALLSTQLKR KYTNQVLTVG QKATFEYHGT NYILTVNRAD VEGQDHTNGI ERGLLSKDTY IVFEASNASG IKIVNQREAA
201: SSNIFKHKEF NLESLGIGGL GAEFADIFRR AFASRVFPPH VTSRLGIKHV KGMLLFGPPG TGKTLMARQI GKMLNGKDPK IVNGPEVLSK FVGETEKNVR
301: DLFADAEQDQ RTLGDASELH VIIFDEIDAI CKSRGSTRDG TGVHDSIVNQ LLTKIDGVEA LNNVLLIGMT NRKDLLDEAL LRPGRLEVQV EISLPDEAGR
401: LQILQIHTNK MKENSFLGTD INLQELAART KNYSGAELEG VVKSATSYAL NRQLSMDDLT KPVEEENIKI TMEDFLHAIY EVQPAFGAST DDLERCRLNG
501: MVDCGHRHNH IYKRAMLLVE QVKVSTRSPL VTCLLEGPSG SGKTALAATI GIDSDFPYVK IVSAETMIGL SESTKCAHIV KVFEDAYKSP MSIIILDDIE
601: RLLEFIAIGP RFSNIISQTL MVLLKRLPPK GKKLLVFGTT SEVTFLESVG ISDCFSVTHS VPTLQKEDAK KVLNQLNLFS EDDVDSAAEA LNDMPIKKIY
701: MLIEMAAQGE NGGSAEAIYA GREKININHF YDCLGDFIRF TG
Arabidopsis Description
NSFNSF [Source:UniProtKB/TrEMBL;Acc:A0A178UTB9]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.