Factsheet for VIT_19s0014g02750.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
endoplasmic reticulum 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g104920.2.1	Tomato	plastid	78.89	84.25
CDY39223	Canola	cytosol, mitochondrion	12.86	83.33
Bra000808.1-P	Field mustard	cytosol	77.81	80.53
CDY21320	Canola	plastid	77.67	80.39
KRH50033	Soybean	endoplasmic reticulum, nucleus	81.06	80.29
Bra029529.1-P	Field mustard	plastid	79.43	79.76
CDX90880	Canola	plastid	79.03	79.67
KRH20460	Soybean	endoplasmic reticulum	79.97	79.65
AT4G04910.1	Thale cress	plastid	79.43	79.11
CDY16637	Canola	plastid	78.35	78.46
CDX86132	Canola	plastid	77.94	78.05
EER93779	Sorghum	cytosol	75.64	75.24
Zm00001d038808_P001	Maize	cytosol	75.24	75.03
Os05t0519400-01	Rice	plasma membrane	75.1	74.7
PGSC0003DMT400076472	Potato	cytosol	79.84	74.68
TraesCS1B01G352200.2	Wheat	cytosol, mitochondrion	72.94	72.54
TraesCS1D01G341900.2	Wheat	cytosol	73.07	72.48
TraesCS1A01G339900.1	Wheat	unclear	73.07	72.29
Zm00001d051286_P013	Maize	cytosol	74.15	72.11
Bra033538.1-P	Field mustard	cytosol	62.38	70.38
CDY34435	Canola	cytosol	68.61	69.26
HORVU1Hr1G076180.22	Barley	cytosol	73.34	68.18
CDY32219	Canola	cytosol	67.79	67.89
Solyc01g104930.1.1	Tomato	cytosol	16.1	65.03
PGSC0003DMT400076471	Potato	cytosol	16.51	62.89
CDY09518	Canola	cytosol	36.54	58.95
KRH24495	Soybean	cytosol	17.32	54.7
GSMUA_Achr6P26190_001	Banana	cytosol	10.69	46.75
Zm00001d000156_P001	Maize	cytosol	18.54	32.16
VIT_05s0102g00260.t01	Wine grape	nucleus	20.03	12.15
VIT_19s0014g02080.t01	Wine grape	cytosol, plastid	17.05	6.58

Protein Annotations

Gene3D:1.10.8.60	EntrezGene:100243494	wikigene:100243494	Gene3D:2.40.40.20	Gene3D:3.10.330.10	Gene3D:3.40.50.300
MapMan:50.3.6	InterPro:AAA+_ATPase	EMBL:AM478216	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	InterPro:Asp_de-COase-like_dom_sf
ProteinID:CAN70797	ProteinID:CAN70797.1	ProteinID:CBI20305	ProteinID:CBI20305.3	InterPro:CDC48_domain_2-like_sf	InterPro:CDC4_N-term_subdom
UniProt:E0CSK6	EMBL:FN595229	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005794
GO:GO:0005886	GO:GO:0009506	GO:GO:0016020	EntrezGene:LOC100243494	wikigene:LOC100243494	InterPro:P-loop_NTPase
PFAM:PF00004	PFAM:PF02359	ScanProsite:PS00674	PANTHER:PTHR23078	PANTHER:PTHR23078:SF11	SMART:SM00382
SMART:SM01073	SUPFAM:SSF50692	SUPFAM:SSF52540	SUPFAM:SSF54585	TIGR:TC65370	UniParc:UPI0001BE1C7A
ArrayExpress:VIT_19s0014g02750	EnsemblPlantsGene:VIT_19s0014g02750	EnsemblPlants:VIT_19s0014g02750.t01	unigene:Vvi.1749	RefSeq:XP_002284987	RefSeq:XP_002284987.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr19:-:2793406..2811361

Molecular Weight (calculated)

81407.7 Da

IEP (calculated)

6.090

GRAVY (calculated)

-0.151

Length

739 amino acids

Sequence
(BLAST)

001: MAGRSGHDSS MIVTNTPARD LVHTNFAYCS PSDLRKFAVH GSNLALASVG DSCMFIYTAH ESIPNGHIAL NAIQRRHARV STGDSVSVSR FIPPDDFNLA
101: LLTLELEFVK KGTKDEQIDA VQLSQQLRKR FINQVMTTGQ RVTFEYHGNG YIFTVNQAVI EGQEKSKGIE RGIIAAETYI IFEAPNSSGI KIVNQREAAS
201: SNIFRQKEFN LQSLGIGGLS AEFADIFRRA FASRVFPSHV TSRLGIKHVK GMLLYGPPGT GKTLMARQIG KMLNGREPKI VNGPEVLSKF VGETEKNVRD
301: LFADAENDQR TRGDQSDLHV IIFDEIDAIC KSRGSTRDGT GVHDSIVNQL LTKIDGVESL NNVLLIGMTN RKDLLDEALL RPGRLEVQVE ISLPDENGRL
401: QILQIHTNKM KENSFLAPDV NLQELAARTK NYSGAELEGV VKSAVSFALN RQLSMDDLTK PVDEESIKVT MEDFLNALQE IIPAFGASTD DLERCRVNGM
501: AECGSRHEHI YQRAMLLVEQ VKVSKGSPLI TCLLEGPSGS GKTSLAATVG IDSDFPYVKI ISAESMIGLS ESSKCARIVK VFEDAYKSQL SIIVLDDIER
601: LIEYVAIGPR FSNIISQTLL VLIKRLPPKG KNVLVIGTTS EVSFLDSVGI RDAFSVTYHV PTLKTEDAKK VLQQLNVFSD DDIDSAAEAL NDMPIKKLYM
701: LIEMAAQGEH GGEAEAIYSG KEKIAISHFF DCLQDMIRY

Best Arabidopsis Sequence Match ( AT4G04910.1 )
(BLAST)

001: MAGRYGSQVM TMTVTNTPSA DLAFTNLAYC SSSDLRQFSV PGSDLFLANV ADSFILSLCG HGSIRDGNIA LNAIQRRHAR VSTGDMVSVS RFVPPENFDL
101: AMLTLELEFV KKGTKSEQVD AALLSTQLKR KYTNQVLTVG QKATFEYHGT NYILTVNRAD VEGQDHTNGI ERGLLSKDTY IVFEASNASG IKIVNQREAA
201: SSNIFKHKEF NLESLGIGGL GAEFADIFRR AFASRVFPPH VTSRLGIKHV KGMLLFGPPG TGKTLMARQI GKMLNGKDPK IVNGPEVLSK FVGETEKNVR
301: DLFADAEQDQ RTLGDASELH VIIFDEIDAI CKSRGSTRDG TGVHDSIVNQ LLTKIDGVEA LNNVLLIGMT NRKDLLDEAL LRPGRLEVQV EISLPDEAGR
401: LQILQIHTNK MKENSFLGTD INLQELAART KNYSGAELEG VVKSATSYAL NRQLSMDDLT KPVEEENIKI TMEDFLHAIY EVQPAFGAST DDLERCRLNG
501: MVDCGHRHNH IYKRAMLLVE QVKVSTRSPL VTCLLEGPSG SGKTALAATI GIDSDFPYVK IVSAETMIGL SESTKCAHIV KVFEDAYKSP MSIIILDDIE
601: RLLEFIAIGP RFSNIISQTL MVLLKRLPPK GKKLLVFGTT SEVTFLESVG ISDCFSVTHS VPTLQKEDAK KVLNQLNLFS EDDVDSAAEA LNDMPIKKIY
701: MLIEMAAQGE NGGSAEAIYA GREKININHF YDCLGDFIRF TG

Arabidopsis Description

NSFNSF [Source:UniProtKB/TrEMBL;Acc:A0A178UTB9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.