CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32219	Canola	cytosol	90.98	90.24
CDY39223	Canola	cytosol, mitochondrion	13.25	85.09
CDY21320	Canola	plastid	71.45	73.25
CDX90880	Canola	plastid	73.22	73.12
CDY16637	Canola	plastid	72.4	71.82
CDX86132	Canola	plastid	71.99	71.41
VIT_19s0014g02750.t01	Wine grape	cytosol	69.26	68.61
KRH20460	Soybean	endoplasmic reticulum	68.99	68.06
KRH50033	Soybean	endoplasmic reticulum, nucleus	68.99	67.69
EER93779	Sorghum	cytosol	64.07	63.12
GSMUA_Achr6P26250_001	Banana	cytosol	3.96	63.04
Zm00001d038808_P001	Maize	cytosol	63.8	63.02
Os05t0519400-01	Rice	plasma membrane	63.52	62.58
TraesCS1B01G352200.2	Wheat	cytosol, mitochondrion	62.7	61.78
PGSC0003DMT400076472	Potato	cytosol	66.67	61.77
TraesCS1D01G341900.2	Wheat	cytosol	62.84	61.74
TraesCS1A01G339900.1	Wheat	unclear	62.84	61.58
Zm00001d051286_P013	Maize	cytosol	63.11	60.79
HORVU1Hr1G076180.22	Barley	cytosol	62.98	57.99
CDY09518	Canola	cytosol	34.43	55.02
PGSC0003DMT400076471	Potato	cytosol	13.39	50.52
KRH24495	Soybean	cytosol	15.44	48.29
Zm00001d000156_P001	Maize	cytosol	15.3	26.29
CDX96221	Canola	cytosol	2.32	13.82
CDY47705	Canola	nucleus	19.26	11.88
CDY10163	Canola	nucleus	19.26	11.86
CDY06186	Canola	nucleus	19.13	11.66
CDY10003	Canola	nucleus	18.99	11.6
CDX75809	Canola	nucleus	17.08	6.78
CDX82447	Canola	nucleus	16.8	6.7
Solyc07g062770.2.1	Tomato	nucleus	6.56	6.52

Protein Annotations

Gene3D:1.10.8.60	Gene3D:2.40.40.20	Gene3D:3.10.330.10	Gene3D:3.40.50.300	MapMan:50.3.6	GO:A0A078H7C8
UniProt:A0A078H7C8	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	InterPro:Asp_de-COase-like_dom_sf	InterPro:CDC48_domain_2-like_sf
InterPro:CDC4_N-term_subdom	EnsemblPlants:CDY34435	ProteinID:CDY34435	ProteinID:CDY34435.1	InterPro:Cdc48_dom2	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:GSBRNA2T00056522001	InterPro:P-loop_NTPase	PFAM:PF00004
PFAM:PF02933	ScanProsite:PS00674	PANTHER:PTHR23078	PANTHER:PTHR23078:SF11	SMART:SM00382	SMART:SM01073
SUPFAM:SSF50692	SUPFAM:SSF52540	SUPFAM:SSF54585	UniParc:UPI0004EE1E9B	:	:

Description

BnaC01g21980DBnaC01g21980D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H7C8]

Coordinates

chrLK032334:-:115373..119693

Molecular Weight (calculated)

81296.8 Da

IEP (calculated)

5.743

GRAVY (calculated)

-0.187

Length

732 amino acids

Sequence
(BLAST)

001: MADRSGSQSS VDITMKVTTT PEAHLAFTNL AYCSTSDLSQ FAIPGTDLFL ANVADSIQDG TIALNAVQRR HARVSADDMV TIARFVPPEK FDLTLLALDL
101: QFVKKGTKNE QVDAVVLSTQ LKKKFMYQVF TVGQRVTFEF HGTNYILTVD QAVVEADWNK KSGIGRGMIC NDTYFVFEAS NASGIKIMNQ REAATRKIFK
201: EKEFNLESLG IGGLNAEFVE IFRRAFAYRT YPLHVRNRIG AKNVKGILLY GPPGTGKTLM ARQIGKMLNG KEPKIVNGPE VLSKFVGETE KNVRDLFADA
301: ENDQRTLGDD SELHVIIFDE IDAICKSRGS SRDGTGVHDS IVNQLLTKID GVEALNNVLV IGMTNRMDML DEALLRSGRL EVHIEIGLPD EAGRVQILHI
401: HTKMMKENSF LAPDVNLQEL AAQTKNYSGA ELEGVVKSAT SYALNRHLDI EDLSKPVDEE NIKVTMDDFL QALREVKPAF GASPKALQNC RPKGFVDCGD
501: RQNLIYQRIM FLVDQVSNET GPPVTCLLEG PSGSGKTALA ATIGIDSNFP YVKIVSADTM AGLQESTKAA RIAKVFEDAY KSPLSIVILD NIERLLEYSE
601: IGPRFSNMIL QTLLIYLNHL PKEGSKLLVL GTTSELTFLK AVGLRKAFSV TYDVPLLRTE DAKKVLKQLN VFSDDDMEEA SKALNDIPIK QLYFLIEMAA
701: QRDGRSKETI YNRKEKLNLN HFFDCLEEVT EN

Best Arabidopsis Sequence Match ( AT4G04910.1 )
(BLAST)

001: MAGRYGSQVM TMTVTNTPSA DLAFTNLAYC SSSDLRQFSV PGSDLFLANV ADSFILSLCG HGSIRDGNIA LNAIQRRHAR VSTGDMVSVS RFVPPENFDL
101: AMLTLELEFV KKGTKSEQVD AALLSTQLKR KYTNQVLTVG QKATFEYHGT NYILTVNRAD VEGQDHTNGI ERGLLSKDTY IVFEASNASG IKIVNQREAA
201: SSNIFKHKEF NLESLGIGGL GAEFADIFRR AFASRVFPPH VTSRLGIKHV KGMLLFGPPG TGKTLMARQI GKMLNGKDPK IVNGPEVLSK FVGETEKNVR
301: DLFADAEQDQ RTLGDASELH VIIFDEIDAI CKSRGSTRDG TGVHDSIVNQ LLTKIDGVEA LNNVLLIGMT NRKDLLDEAL LRPGRLEVQV EISLPDEAGR
401: LQILQIHTNK MKENSFLGTD INLQELAART KNYSGAELEG VVKSATSYAL NRQLSMDDLT KPVEEENIKI TMEDFLHAIY EVQPAFGAST DDLERCRLNG
501: MVDCGHRHNH IYKRAMLLVE QVKVSTRSPL VTCLLEGPSG SGKTALAATI GIDSDFPYVK IVSAETMIGL SESTKCAHIV KVFEDAYKSP MSIIILDDIE
601: RLLEFIAIGP RFSNIISQTL MVLLKRLPPK GKKLLVFGTT SEVTFLESVG ISDCFSVTHS VPTLQKEDAK KVLNQLNLFS EDDVDSAAEA LNDMPIKKIY
701: MLIEMAAQGE NGGSAEAIYA GREKININHF YDCLGDFIRF TG

Arabidopsis Description

NSFNSF [Source:UniProtKB/TrEMBL;Acc:A0A178UTB9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.