CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

cytosol 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY09518	Canola	cytosol	91.23	22.71
CDY21320	Canola	plastid	89.47	14.29
CDX90880	Canola	plastid	89.47	13.92
CDX86132	Canola	plastid	89.47	13.82
AT4G04910.1	Thale cress	plastid	89.47	13.75
CDY16637	Canola	plastid	88.6	13.69
CDY34435	Canola	cytosol	85.09	13.25
KRH50033	Soybean	endoplasmic reticulum, nucleus	85.09	13.0
KRH20460	Soybean	endoplasmic reticulum	84.21	12.94
VIT_19s0014g02750.t01	Wine grape	cytosol	83.33	12.86
Zm00001d038808_P001	Maize	cytosol	83.33	12.82
EER93779	Sorghum	cytosol	83.33	12.79
CDY32219	Canola	cytosol	81.58	12.6
TraesCS1B01G352200.2	Wheat	cytosol, mitochondrion	81.58	12.52
Zm00001d051286_P013	Maize	cytosol	83.33	12.5
TraesCS1D01G341900.2	Wheat	cytosol	81.58	12.48
TraesCS1A01G339900.1	Wheat	unclear	81.58	12.45
PGSC0003DMT400076472	Potato	cytosol	85.96	12.41
Os05t0519400-01	Rice	plasma membrane	80.7	12.38
HORVU1Hr1G076180.22	Barley	cytosol	81.58	11.7
KRH24495	Soybean	cytosol	14.04	6.84
PGSC0003DMT400076471	Potato	cytosol	8.77	5.15
CDY47705	Canola	nucleus	35.96	3.45
CDY10163	Canola	nucleus	35.96	3.45
CDY10003	Canola	nucleus	35.96	3.42
CDY06186	Canola	nucleus	35.96	3.41
CDX96221	Canola	cytosol	3.51	3.25
CDX82447	Canola	nucleus	31.58	1.96
CDX75809	Canola	nucleus	31.58	1.95
Zm00001d000156_P001	Maize	cytosol	7.02	1.88
Solyc07g062770.2.1	Tomato	nucleus	9.65	1.49
GSMUA_Achr6P26250_001	Banana	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDY39223	EnsemblPlantsGene:GSBRNA2T00067443001	Gene3D:3.40.50.300	GO:A0A078HR30	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_core	InterPro:P-loop_NTPase	PANTHER:PTHR23078
PANTHER:PTHR23078:SF11	PFAM:PF00004	PRINTS:PR00830	ProteinID:CDY39223	ProteinID:CDY39223.1	SMART:SM00382
SUPFAM:SSF52540	UniParc:UPI0004EDBDF9	UniProt:A0A078HR30	MapMan:35.1	:	:

Description

BnaA03g50350DBnaA03g50350D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HR30]

Coordinates

chrLK032443:-:233886..235044

Molecular Weight (calculated)

12528.2 Da

IEP (calculated)

6.525

GRAVY (calculated)

-0.248

Length

114 amino acids

Sequence
(BLAST)

001: MLLFGPPGTG KTLMARQIGK MLNGKDPKIV NGPEVLSKFV GETEKNVRDL FADAEQDQRT LGDASELHVI IFDEIDAICK SRGSTRDGTG VHDSIVNQLL
101: TKAEYFRLLL KPVT

Best Arabidopsis Sequence Match ( AT4G04910.1 )
(BLAST)

001: MAGRYGSQVM TMTVTNTPSA DLAFTNLAYC SSSDLRQFSV PGSDLFLANV ADSFILSLCG HGSIRDGNIA LNAIQRRHAR VSTGDMVSVS RFVPPENFDL
101: AMLTLELEFV KKGTKSEQVD AALLSTQLKR KYTNQVLTVG QKATFEYHGT NYILTVNRAD VEGQDHTNGI ERGLLSKDTY IVFEASNASG IKIVNQREAA
201: SSNIFKHKEF NLESLGIGGL GAEFADIFRR AFASRVFPPH VTSRLGIKHV KGMLLFGPPG TGKTLMARQI GKMLNGKDPK IVNGPEVLSK FVGETEKNVR
301: DLFADAEQDQ RTLGDASELH VIIFDEIDAI CKSRGSTRDG TGVHDSIVNQ LLTKIDGVEA LNNVLLIGMT NRKDLLDEAL LRPGRLEVQV EISLPDEAGR
401: LQILQIHTNK MKENSFLGTD INLQELAART KNYSGAELEG VVKSATSYAL NRQLSMDDLT KPVEEENIKI TMEDFLHAIY EVQPAFGAST DDLERCRLNG
501: MVDCGHRHNH IYKRAMLLVE QVKVSTRSPL VTCLLEGPSG SGKTALAATI GIDSDFPYVK IVSAETMIGL SESTKCAHIV KVFEDAYKSP MSIIILDDIE
601: RLLEFIAIGP RFSNIISQTL MVLLKRLPPK GKKLLVFGTT SEVTFLESVG ISDCFSVTHS VPTLQKEDAK KVLNQLNLFS EDDVDSAAEA LNDMPIKKIY
701: MLIEMAAQGE NGGSAEAIYA GREKININHF YDCLGDFIRF TG

Arabidopsis Description

NSFNSF [Source:UniProtKB/TrEMBL;Acc:A0A178UTB9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.