CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 7
endoplasmic reticulum 2
cytosol 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH50033	Soybean	endoplasmic reticulum, nucleus	97.98	97.45
CDY39223	Canola	cytosol, mitochondrion	12.94	84.21
Solyc01g104920.2.1	Tomato	plastid	75.74	81.21
VIT_19s0014g02750.t01	Wine grape	cytosol	79.65	79.97
Bra000808.1-P	Field mustard	cytosol	76.28	79.27
CDY21320	Canola	plastid	76.28	79.27
CDX90880	Canola	plastid	77.36	78.31
Bra029529.1-P	Field mustard	plastid	77.36	77.99
CDY16637	Canola	plastid	77.09	77.51
AT4G04910.1	Thale cress	plastid	77.22	77.22
CDX86132	Canola	plastid	76.68	77.1
GSMUA_Achr9P05850_001	Banana	cytosol	74.8	74.7
GSMUA_Achr8P27650_001	Banana	cytosol	73.45	72.96
EER93779	Sorghum	cytosol	72.91	72.81
Zm00001d038808_P001	Maize	cytosol	72.37	72.47
PGSC0003DMT400076472	Potato	cytosol	76.95	72.28
Os05t0519400-01	Rice	plasma membrane	72.24	72.14
TraesCS1B01G352200.2	Wheat	cytosol, mitochondrion	71.29	71.2
TraesCS1D01G341900.2	Wheat	cytosol	71.29	71.01
TraesCS1A01G339900.1	Wheat	unclear	71.29	70.82
Zm00001d051286_P013	Maize	cytosol	71.97	70.26
Bra033538.1-P	Field mustard	cytosol	61.59	69.77
CDY34435	Canola	cytosol	68.06	68.99
HORVU1Hr1G076180.22	Barley	cytosol	71.7	66.92
CDY32219	Canola	cytosol	66.44	66.8
Solyc01g104930.1.1	Tomato	cytosol	15.77	63.93
PGSC0003DMT400076471	Potato	cytosol	16.44	62.89
KRH24495	Soybean	cytosol	19.81	62.82
CDY09518	Canola	cytosol	36.93	59.83
GSMUA_Achr6P26190_001	Banana	cytosol	9.97	43.79
Zm00001d000156_P001	Maize	cytosol	18.46	32.16
KRH24642	Soybean	cytosol, nucleus	19.14	11.82
KRH29644	Soybean	nucleus	18.87	11.71
KRH27288	Soybean	nucleus	19.14	7.82
KRH22028	Soybean	nucleus	19.14	7.61

Protein Annotations

Gene3D:1.10.8.60	EntrezGene:100791847	Gene3D:2.40.40.20	Gene3D:3.10.330.10	Gene3D:3.40.50.300	MapMan:50.3.6
InterPro:AAA+_ATPase	EMBL:ACUP02008265	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	InterPro:Asp_de-COase-like_dom_sf	InterPro:CDC48_domain_2-like_sf
InterPro:Cdc48_dom2	EnsemblPlantsGene:GLYMA_13G180100	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
UniProt:I1M0B2	EnsemblPlants:KRH20460	ProteinID:KRH20460	ProteinID:KRH20460.1	InterPro:P-loop_NTPase	PFAM:PF00004
PFAM:PF02933	ScanProsite:PS00674	PANTHER:PTHR23078	PANTHER:PTHR23078:SF11	SMART:SM00382	SUPFAM:SSF50692
SUPFAM:SSF52540	SUPFAM:SSF54585	UniParc:UPI000233D4BD	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr13:+:29340616..29352010

Molecular Weight (calculated)

81638.9 Da

IEP (calculated)

5.805

GRAVY (calculated)

-0.144

Length

742 amino acids

Sequence
(BLAST)

001: MFGLSSSSSS ASNMRVTNTP ASDLALTNLA FCSPSDLRNF AVPGHNNLYL AAVADSFVLS LSAHDNIGSG QIALNVVQRR CVKVSSGDSV QVSRFVPPED
101: FNLALLTLDL EFVKKGSKSE QIDAVLLAKQ LRKRFMNQVM TVGQKVLFEY HGNNYSFTVS NAAVEGQEKS NSLERGMISD DTYIVFETSR DSGIKIVNQR
201: EGATSNIFKQ KEFNLQSLGI GGLSAEFADI FRRAFASRVF PPHVTSKLGI KHVKGMLLYG PPGTGKTLMA RQIGKILNGK EPKIVNGPEV LSKFVGETEK
301: NVRDLFADAE QDQRTRGDES DLHVIIFDEI DAICKSRGST RDGTGVHDSI VNQLLTKIDG VESLNNVLLI GMTNRKDMLD EALLRPGRLE VQVEISLPDE
401: NGRLQILQIH TNKMKENSFL AADVNLQELA ARTKNYSGAE LEGVVKSAVS YALNRQLSLE DLTKPVEEEN IKVTMDDFLN ALHEVTSAFG ASTDDLERCR
501: LHGIVECGDR HKHIYQRTML LVEQVKVSKG SPLVTCLLEG SRGSGKTALS ATVGVDSDFP YVKIVSAESM IGLHESTKCA QIIKVFEDAY KSPLSVIILD
601: DIERLLEYVP IGSRFSNFIS QTLLVLLKRL PPKGKKLMVI GTTSELDFLE SIGFCDTFSV TYHIPTLNTK DAKKVLEQLN VFSDEDIDSA AEALNDMPIR
701: KLYMLIEMAA QGEQGGSAEA IFSGKEKINI AHFYDCLQDV VR

Best Arabidopsis Sequence Match ( AT4G04910.1 )
(BLAST)

001: MAGRYGSQVM TMTVTNTPSA DLAFTNLAYC SSSDLRQFSV PGSDLFLANV ADSFILSLCG HGSIRDGNIA LNAIQRRHAR VSTGDMVSVS RFVPPENFDL
101: AMLTLELEFV KKGTKSEQVD AALLSTQLKR KYTNQVLTVG QKATFEYHGT NYILTVNRAD VEGQDHTNGI ERGLLSKDTY IVFEASNASG IKIVNQREAA
201: SSNIFKHKEF NLESLGIGGL GAEFADIFRR AFASRVFPPH VTSRLGIKHV KGMLLFGPPG TGKTLMARQI GKMLNGKDPK IVNGPEVLSK FVGETEKNVR
301: DLFADAEQDQ RTLGDASELH VIIFDEIDAI CKSRGSTRDG TGVHDSIVNQ LLTKIDGVEA LNNVLLIGMT NRKDLLDEAL LRPGRLEVQV EISLPDEAGR
401: LQILQIHTNK MKENSFLGTD INLQELAART KNYSGAELEG VVKSATSYAL NRQLSMDDLT KPVEEENIKI TMEDFLHAIY EVQPAFGAST DDLERCRLNG
501: MVDCGHRHNH IYKRAMLLVE QVKVSTRSPL VTCLLEGPSG SGKTALAATI GIDSDFPYVK IVSAETMIGL SESTKCAHIV KVFEDAYKSP MSIIILDDIE
601: RLLEFIAIGP RFSNIISQTL MVLLKRLPPK GKKLLVFGTT SEVTFLESVG ISDCFSVTHS VPTLQKEDAK KVLNQLNLFS EDDVDSAAEA LNDMPIKKIY
701: MLIEMAAQGE NGGSAEAIYA GREKININHF YDCLGDFIRF TG

Arabidopsis Description

NSFNSF [Source:UniProtKB/TrEMBL;Acc:A0A178UTB9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.