Factsheet for Os05t0519400-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 4
mitochondrion 3
endoplasmic reticulum 1
plastid 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 18260611
plasma membrane: 27800704
plastid: 27992503
plasma membrane: 28056797

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93779	Sorghum	cytosol	91.52	91.52
Zm00001d038808_P001	Maize	cytosol	90.17	90.42
TraesCS1B01G352200.2	Wheat	cytosol, mitochondrion	89.91	89.91
TraesCS1A01G339900.1	Wheat	unclear	89.77	89.29
TraesCS1D01G341900.2	Wheat	cytosol	89.37	89.13
Zm00001d051286_P013	Maize	cytosol	88.56	86.58
HORVU1Hr1G076180.22	Barley	cytosol	89.5	83.65
CDY39223	Canola	cytosol, mitochondrion	12.38	80.7
Solyc01g104920.2.1	Tomato	plastid	71.2	76.45
GSMUA_Achr8P27650_001	Banana	cytosol	76.72	76.31
GSMUA_Achr9P05850_001	Banana	cytosol	75.77	75.77
VIT_19s0014g02750.t01	Wine grape	cytosol	74.7	75.1
Bra000808.1-P	Field mustard	cytosol	71.06	73.95
CDY21320	Canola	plastid	71.06	73.95
KRH50033	Soybean	endoplasmic reticulum, nucleus	72.95	72.65
CDX90880	Canola	plastid	71.33	72.31
Bra029529.1-P	Field mustard	plastid	71.6	72.28
KRH20460	Soybean	endoplasmic reticulum	72.14	72.24
CDY16637	Canola	plastid	71.2	71.68
CDX86132	Canola	plastid	71.06	71.54
AT4G04910.1	Thale cress	plastid	71.2	71.29
PGSC0003DMT400076472	Potato	cytosol	71.2	66.96
Bra033538.1-P	Field mustard	cytosol	57.6	65.34
CDY34435	Canola	cytosol	62.58	63.52
CDY32219	Canola	cytosol	61.64	62.06
CDY09518	Canola	cytosol	35.13	56.99
Solyc01g104930.1.1	Tomato	cytosol	13.19	53.55
KRH24495	Soybean	cytosol	16.69	52.99
PGSC0003DMT400076471	Potato	cytosol	13.32	51.03
Zm00001d000156_P001	Maize	cytosol	20.19	35.21
Os09t0515100-02	Rice	cytosol	19.92	12.35
Os01t0668200-00	Rice	nucleus	7.67	10.27
Os01t0668300-01	Rice	cytosol	8.75	6.89

Protein Annotations

Gene3D:1.10.8.60	Gene3D:2.40.40.20	Gene3D:3.10.330.10	Gene3D:3.40.50.300	EntrezGene:4339340	MapMan:50.3.6
InterPro:AAA+_ATPase	ProteinID:AAU44261.1	EMBL:AK072976	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	InterPro:Asp_de-COase-like_dom_sf
ProteinID:BAF17977.1	ProteinID:BAS94917.1	ProteinID:BAS94918.1	InterPro:CDC48_domain_2-like_sf	InterPro:CDC4_N-term_subdom	ProteinID:EEE64387.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005794	GO:GO:0005886	GO:GO:0009506
GO:GO:0016020	EnsemblPlantsGene:Os05g0519400	EnsemblPlants:Os05t0519400-01	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02359
ScanProsite:PS00674	PANTHER:PTHR23078	PANTHER:PTHR23078:SF11	UniProt:Q65X08	SMART:SM00382	SMART:SM01073
SUPFAM:SSF50692	SUPFAM:SSF52540	SUPFAM:SSF54585	UniParc:UPI000043F4AD	RefSeq:XP_015640101.1	SEG:seg

Description

OsSec18, Sec18Homologue of NSF (N-ethylmaleimide sensitive factor), ATPase, Regulation of vacuolar morphology in endosperm cell (Os05t0519400-01);Similar to predicted protein. (Os05t0519400-02);Similar to predicted protein. (Os05t0519400-03)

Coordinates

chr5:-:25781735..25788535

Molecular Weight (calculated)

81133.5 Da

IEP (calculated)

5.922

GRAVY (calculated)

-0.098

Length

743 amino acids

Sequence
(BLAST)

001: MAGRNYHGYG GGGGGGMSMV VASTPGQELA LTNCAYVSSA DIRRFPNALA LVGDAFVFTL RAHDAVSAGS IALNAIQRRQ TKVSAGDSIT VSSFAPPDDF
101: KLALLTLELE YTKARTNRNE ELDAVVLAQQ LRRRFLDQVM TSGQRVPFEF CGTNYIFTVN QALLDGQENS TPLDRGFLSS DTYIIFEAAP NSGIKVVNQK
201: EAASSKLFKH KEFNLEKLGI GGLSAEFTDI FRRAFASRVF PPHVVNKLGI KHVKGILLYG PPGTGKTLMA RQIGKLLNGN EPKIVNGPEV LSKFVGETEK
301: NVRDLFADAE NDQKTRGDQS DLHVIIFDEI DAICKSRGST RDGTGVHDSI VNQLLTKIDG VEALNNVLLI GMTNRKDLLD EALLRPGRLE VHIEINLPDE
401: NGRLQILQIH TNKMKESSFL SPNVNLQELA ARTKNYSGAE LEGVVKSAVS YALNRQISMD DLTKPLDEES IKVTMDDFVN ALHEITPAFG ASTDDLERCR
501: LRGMVDCGKA HRHLYERGML LVEQVKVSKG SPLVTCLLEG PAGSGKSALA ATVGIDSDFA YVKIISAETM IGFSESSKCA QICKVFEDAY KSQFGIIILD
601: DIERLLEYVA IGPRFSNIIS QTLLVLLKRV PPKGKNLLVI GTTSEVGFLE SIGMCDVFSV TYHVPKLKKE DATKVLRHLN VFDEADIDAA AEALDDMPIK
701: KLYTLVEMAA QGPSGGSAEA VYGGEEKIDI NHFFSILSDI IRY

Best Arabidopsis Sequence Match ( AT4G04910.1 )
(BLAST)

001: MAGRYGSQVM TMTVTNTPSA DLAFTNLAYC SSSDLRQFSV PGSDLFLANV ADSFILSLCG HGSIRDGNIA LNAIQRRHAR VSTGDMVSVS RFVPPENFDL
101: AMLTLELEFV KKGTKSEQVD AALLSTQLKR KYTNQVLTVG QKATFEYHGT NYILTVNRAD VEGQDHTNGI ERGLLSKDTY IVFEASNASG IKIVNQREAA
201: SSNIFKHKEF NLESLGIGGL GAEFADIFRR AFASRVFPPH VTSRLGIKHV KGMLLFGPPG TGKTLMARQI GKMLNGKDPK IVNGPEVLSK FVGETEKNVR
301: DLFADAEQDQ RTLGDASELH VIIFDEIDAI CKSRGSTRDG TGVHDSIVNQ LLTKIDGVEA LNNVLLIGMT NRKDLLDEAL LRPGRLEVQV EISLPDEAGR
401: LQILQIHTNK MKENSFLGTD INLQELAART KNYSGAELEG VVKSATSYAL NRQLSMDDLT KPVEEENIKI TMEDFLHAIY EVQPAFGAST DDLERCRLNG
501: MVDCGHRHNH IYKRAMLLVE QVKVSTRSPL VTCLLEGPSG SGKTALAATI GIDSDFPYVK IVSAETMIGL SESTKCAHIV KVFEDAYKSP MSIIILDDIE
601: RLLEFIAIGP RFSNIISQTL MVLLKRLPPK GKKLLVFGTT SEVTFLESVG ISDCFSVTHS VPTLQKEDAK KVLNQLNLFS EDDVDSAAEA LNDMPIKKIY
701: MLIEMAAQGE NGGSAEAIYA GREKININHF YDCLGDFIRF TG

Arabidopsis Description

NSFNSF [Source:UniProtKB/TrEMBL;Acc:A0A178UTB9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.