CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra033538.1-P	Field mustard	cytosol	88.08	99.24
CDY34435	Canola	cytosol	90.24	90.98
CDY39223	Canola	cytosol, mitochondrion	12.6	81.58
CDY21320	Canola	plastid	71.0	73.39
CDX90880	Canola	plastid	72.09	72.58
CDX86132	Canola	plastid	71.54	71.54
CDY16637	Canola	plastid	71.41	71.41
VIT_19s0014g02750.t01	Wine grape	cytosol	67.89	67.79
KRH50033	Soybean	endoplasmic reticulum, nucleus	67.21	66.49
KRH20460	Soybean	endoplasmic reticulum	66.8	66.44
GSMUA_Achr6P26250_001	Banana	cytosol	3.93	63.04
EER93779	Sorghum	cytosol	63.01	62.58
Zm00001d038808_P001	Maize	cytosol	62.47	62.21
Os05t0519400-01	Rice	plasma membrane	62.06	61.64
TraesCS1B01G352200.2	Wheat	cytosol, mitochondrion	61.79	61.37
TraesCS1D01G341900.2	Wheat	cytosol	61.92	61.34
TraesCS1A01G339900.1	Wheat	unclear	61.92	61.18
PGSC0003DMT400076472	Potato	cytosol	64.77	60.51
Zm00001d051286_P013	Maize	cytosol	61.38	59.61
HORVU1Hr1G076180.22	Barley	cytosol	62.06	57.61
CDY09518	Canola	cytosol	32.66	52.62
PGSC0003DMT400076471	Potato	cytosol	12.74	48.45
KRH24495	Soybean	cytosol	14.91	47.01
Zm00001d000156_P001	Maize	cytosol	14.77	25.59
CDX96221	Canola	cytosol	2.44	14.63
CDY47705	Canola	nucleus	18.7	11.63
CDY10163	Canola	nucleus	18.7	11.61
CDY06186	Canola	nucleus	18.56	11.41
CDY10003	Canola	nucleus	18.43	11.35
CDX75809	Canola	nucleus	16.67	6.67
CDX82447	Canola	nucleus	16.4	6.59
Solyc07g062770.2.1	Tomato	nucleus	6.37	6.39

Protein Annotations

Gene3D:1.10.8.60	Gene3D:2.40.40.20	Gene3D:3.10.330.10	Gene3D:3.40.50.300	MapMan:50.3.6	GO:A0A078H491
UniProt:A0A078H491	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	InterPro:Asp_de-COase-like_dom_sf	InterPro:CDC48_domain_2-like_sf
InterPro:CDC4_N-term_subdom	EnsemblPlants:CDY32219	ProteinID:CDY32219	ProteinID:CDY32219.1	InterPro:Cdc48_dom2	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:GSBRNA2T00051652001	InterPro:P-loop_NTPase	PFAM:PF00004
PFAM:PF02933	ScanProsite:PS00674	PANTHER:PTHR23078	PANTHER:PTHR23078:SF11	SMART:SM00382	SMART:SM01073
SUPFAM:SSF50692	SUPFAM:SSF52540	SUPFAM:SSF54585	UniParc:UPI0004EF1C77	:	:

Description

BnaA01g17650DBnaA01g17650D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H491]

Coordinates

chrLK032290:-:78953..83317

Molecular Weight (calculated)

82275.3 Da

IEP (calculated)

6.088

GRAVY (calculated)

-0.149

Length

738 amino acids

Sequence
(BLAST)

001: MADRSGSQSS VVITMKVATT PEAHLAFTNL AYCSPSDLSQ FAILGTNFFL ANVADVFTLS LIQDGTIALN AVQRRQARVS ADDMVTITRF VPPEKFDLIL
101: LALELEFVKK GTKNEQVDAV VLSTQLKKKF MYQVFTVGQR VTFEFHGTNY ILTVNRAVIE ADGSQTNGIE RGMIFNDTYF VFEASNASGI KIMNQREAAT
201: RKIFKEKEFF NNLSLEIGGL NAVFVDLFRR AFSYRILPPY LRDRLGRKQV KGVLLYGPPG TGKTLMARQI GKMLNGKEPK IVNGPEVLNK FVGETEKNIR
301: DLFADAENDQ RTHGDDSELH VIIFDEIDAI CKSRGSSSDG TGVHDSIVNQ LLTKIDGVEA LNNVLLIGMT NRKDMLDEAL LRSGRLEVHI EIGLPDEAGR
401: VQILHIHTKM LKENSFLAPD VNLQELAAQT KNYSGAELEG VVKSATSYAL FRHLNMEDLS NPVDEENIKI TMEDFRQGLR EVMPAFGASP KALQNCRPKG
501: FVDCGDRQNL IYKRIMFLVE QVSNETSPPV TCLLKGPSGS GKTALAATIG IDSNFPYVKI VSAETMAGLQ ESTKAARIAK VFEDAYKSPL SIVILDNIER
601: LLEYSEIGPR FSNMILQTLL IYLNQLPKEG SKLLVLGTTS ELTFLKAVGL RKAFSVTYDV PLLRTEDAKK VLKQLNVFSD DDMEEASKAL NDIPIKKLYF
701: LIEMAAQRDG RSKETIYTRK EKLDLTHFFD CLEEVTEN

Best Arabidopsis Sequence Match ( AT4G04910.1 )
(BLAST)

001: MAGRYGSQVM TMTVTNTPSA DLAFTNLAYC SSSDLRQFSV PGSDLFLANV ADSFILSLCG HGSIRDGNIA LNAIQRRHAR VSTGDMVSVS RFVPPENFDL
101: AMLTLELEFV KKGTKSEQVD AALLSTQLKR KYTNQVLTVG QKATFEYHGT NYILTVNRAD VEGQDHTNGI ERGLLSKDTY IVFEASNASG IKIVNQREAA
201: SSNIFKHKEF NLESLGIGGL GAEFADIFRR AFASRVFPPH VTSRLGIKHV KGMLLFGPPG TGKTLMARQI GKMLNGKDPK IVNGPEVLSK FVGETEKNVR
301: DLFADAEQDQ RTLGDASELH VIIFDEIDAI CKSRGSTRDG TGVHDSIVNQ LLTKIDGVEA LNNVLLIGMT NRKDLLDEAL LRPGRLEVQV EISLPDEAGR
401: LQILQIHTNK MKENSFLGTD INLQELAART KNYSGAELEG VVKSATSYAL NRQLSMDDLT KPVEEENIKI TMEDFLHAIY EVQPAFGAST DDLERCRLNG
501: MVDCGHRHNH IYKRAMLLVE QVKVSTRSPL VTCLLEGPSG SGKTALAATI GIDSDFPYVK IVSAETMIGL SESTKCAHIV KVFEDAYKSP MSIIILDDIE
601: RLLEFIAIGP RFSNIISQTL MVLLKRLPPK GKKLLVFGTT SEVTFLESVG ISDCFSVTHS VPTLQKEDAK KVLNQLNLFS EDDVDSAAEA LNDMPIKKIY
701: MLIEMAAQGE NGGSAEAIYA GREKININHF YDCLGDFIRF TG

Arabidopsis Description

NSFNSF [Source:UniProtKB/TrEMBL;Acc:A0A178UTB9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.