Factsheet for PGSC0003DMT400076472

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
endoplasmic reticulum 3
mitochondrion 1
extracellular 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	endoplasmic reticulum
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	endoplasmic reticulum
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g104920.2.1	Tomato	plastid	82.28	93.93
CDY39223	Canola	cytosol, mitochondrion	12.41	85.96
VIT_19s0014g02750.t01	Wine grape	cytosol	74.68	79.84
CDY21320	Canola	plastid	70.25	77.73
Bra000808.1-P	Field mustard	cytosol	70.13	77.59
CDX90880	Canola	plastid	71.65	77.22
Bra029529.1-P	Field mustard	plastid	71.77	77.04
KRH20460	Soybean	endoplasmic reticulum	72.28	76.95
KRH50033	Soybean	endoplasmic reticulum, nucleus	72.28	76.54
AT4G04910.1	Thale cress	plastid	71.27	75.88
CDY16637	Canola	plastid	70.76	75.75
CDX86132	Canola	plastid	70.76	75.75
Zm00001d038808_P001	Maize	cytosol	67.97	72.47
EER93779	Sorghum	cytosol	67.97	72.27
Os05t0519400-01	Rice	plasma membrane	66.96	71.2
TraesCS1D01G341900.2	Wheat	cytosol	66.46	70.47
TraesCS1B01G352200.2	Wheat	cytosol, mitochondrion	66.2	70.39
TraesCS1A01G339900.1	Wheat	unclear	66.33	70.15
Zm00001d051286_P013	Maize	cytosol	67.34	70.0
PGSC0003DMT400076471	Potato	cytosol	16.84	68.56
Bra033538.1-P	Field mustard	cytosol	56.84	68.55
CDY34435	Canola	cytosol	61.77	66.67
HORVU1Hr1G076180.22	Barley	cytosol	66.2	65.79
CDY32219	Canola	cytosol	60.51	64.77
CDY09518	Canola	cytosol	34.68	59.83
KRH24495	Soybean	cytosol	16.08	54.27
Zm00001d000156_P001	Maize	cytosol	17.47	32.39
PGSC0003DMT400032278	Potato	cytosol, mitochondrion, nucleus	17.97	7.73

Protein Annotations

Gene3D:1.10.8.60	EntrezGene:102590007	Gene3D:3.10.330.10	Gene3D:3.40.50.300	MapMan:50.3.6	InterPro:AAA+_ATPase
InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	InterPro:Asp_de-COase-like_dom_sf	InterPro:CDC48_domain_2-like_sf	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	UniProt:M1CWU5
InterPro:P-loop_NTPase	PFAM:PF00004	EnsemblPlantsGene:PGSC0003DMG402029739	PGSC:PGSC0003DMG402029739	EnsemblPlants:PGSC0003DMT400076472	ScanProsite:PS00674
PANTHER:PTHR23078	PANTHER:PTHR23078:SF11	SMART:SM00382	SUPFAM:SSF50692	SUPFAM:SSF52540	SUPFAM:SSF54585
TMHMM:TMhelix	UniParc:UPI0002967ECB	SEG:seg	:	:	:

Description

N-ethylmaleimide sensitive fusion protein [Source:PGSC_GENE;Acc:PGSC0003DMG402029739]

Coordinates

chr1:-:81690463..81698814

Molecular Weight (calculated)

87105.5 Da

IEP (calculated)

6.010

GRAVY (calculated)

-0.052

Length

790 amino acids

Sequence
(BLAST)

001: MAGRYGSSGG VASTTMNVTN TPAKDLAYTN CGYCSPTDLR NFLVPGSKFA YALIADAFVL TLAYPFKFQL LLFLLLIFRL KIYFVSVFII GETSPLNADG
101: RIPISYCLNC ETLPTTPFLM VNLVLMRFKD VMPKFPLETL YLFVPPEDFN LALLTLDLEF VKKGTKEEQV DAVSLANQVR KRFAKQIMTT GQKVTLEYHG
201: NGYIVTVNQA TVEGQEKSNV ERGMVSADTY IIFEAANSSG IKIVNQREAA SSSIFRQKEF NLESLGIGGL GAEFSDIFRR AFASRVFPPH VTSKLGIKHV
301: KGMLLHGPPG TGKTLMARQI GKMLNGKEPK IVNGPEVLSK FVGETEKNVR DLFADAEQDQ KTKGDQSELH VIIFDEIDAI CKSRGSTRDG TGVHDSIVNQ
401: LLTKIDGVES LNNVLLIGMT NRKDLLDEAL MRPGRLEVQV EISLPDENGR LQILQIHTNK MKENSFLSPD VNLQELAART KNYSGAELEG VVKSAVSYAL
501: NRQLSMDDLT KPVDEESIKV TMDDFLYAIN EVRPAFGAST DDLERCRLNG IVDCGERHQH IYRRTMLLAE QVKVSRGSPL ITCLLEGPSG SGKTAMAATV
601: GIESDFPYVK IISAETMIGL SESSKCSQIV KVFEDAYKSP LSIVVLDGIE RLLEYVPIGP RFSNLISQTL MVLLKRLPPK GKKILVIGTT SESGFLDSVG
701: LCDAFSVTYH VPTLKTEDAK KVLQQLDVFA SDDVDSAAEA LNDMPIKKLY MVVEMAAQGE HGGTAEAIYS GKEKINIAHF YDCLQDIVRY

Best Arabidopsis Sequence Match ( AT4G04910.1 )
(BLAST)

001: MAGRYGSQVM TMTVTNTPSA DLAFTNLAYC SSSDLRQFSV PGSDLFLANV ADSFILSLCG HGSIRDGNIA LNAIQRRHAR VSTGDMVSVS RFVPPENFDL
101: AMLTLELEFV KKGTKSEQVD AALLSTQLKR KYTNQVLTVG QKATFEYHGT NYILTVNRAD VEGQDHTNGI ERGLLSKDTY IVFEASNASG IKIVNQREAA
201: SSNIFKHKEF NLESLGIGGL GAEFADIFRR AFASRVFPPH VTSRLGIKHV KGMLLFGPPG TGKTLMARQI GKMLNGKDPK IVNGPEVLSK FVGETEKNVR
301: DLFADAEQDQ RTLGDASELH VIIFDEIDAI CKSRGSTRDG TGVHDSIVNQ LLTKIDGVEA LNNVLLIGMT NRKDLLDEAL LRPGRLEVQV EISLPDEAGR
401: LQILQIHTNK MKENSFLGTD INLQELAART KNYSGAELEG VVKSATSYAL NRQLSMDDLT KPVEEENIKI TMEDFLHAIY EVQPAFGAST DDLERCRLNG
501: MVDCGHRHNH IYKRAMLLVE QVKVSTRSPL VTCLLEGPSG SGKTALAATI GIDSDFPYVK IVSAETMIGL SESTKCAHIV KVFEDAYKSP MSIIILDDIE
601: RLLEFIAIGP RFSNIISQTL MVLLKRLPPK GKKLLVFGTT SEVTFLESVG ISDCFSVTHS VPTLQKEDAK KVLNQLNLFS EDDVDSAAEA LNDMPIKKIY
701: MLIEMAAQGE NGGSAEAIYA GREKININHF YDCLGDFIRF TG

Arabidopsis Description

NSFNSF [Source:UniProtKB/TrEMBL;Acc:A0A178UTB9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.