CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:

plastid 6
endoplasmic reticulum 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH20460	Soybean	endoplasmic reticulum	97.45	97.98
CDY39223	Canola	cytosol, mitochondrion	13.0	85.09
Solyc01g104920.2.1	Tomato	plastid	75.6	81.5
VIT_19s0014g02750.t01	Wine grape	cytosol	80.29	81.06
Bra000808.1-P	Field mustard	cytosol	76.68	80.11
CDY21320	Canola	plastid	76.54	79.97
CDX90880	Canola	plastid	77.75	79.13
Bra029529.1-P	Field mustard	plastid	77.75	78.8
CDY16637	Canola	plastid	77.48	78.32
CDX86132	Canola	plastid	77.08	77.91
AT4G04910.1	Thale cress	plastid	77.48	77.9
GSMUA_Achr9P05850_001	Banana	cytosol	74.93	75.24
Zm00001d038808_P001	Maize	cytosol	73.32	73.82
EER93779	Sorghum	cytosol	73.46	73.76
GSMUA_Achr8P27650_001	Banana	cytosol	73.73	73.63
Os05t0519400-01	Rice	plasma membrane	72.65	72.95
PGSC0003DMT400076472	Potato	cytosol	76.54	72.28
TraesCS1B01G352200.2	Wheat	cytosol, mitochondrion	71.45	71.74
TraesCS1D01G341900.2	Wheat	cytosol	71.45	71.54
TraesCS1A01G339900.1	Wheat	unclear	71.45	71.35
Zm00001d051286_P013	Maize	cytosol	72.52	71.18
Bra033538.1-P	Field mustard	cytosol	61.39	69.92
CDY34435	Canola	cytosol	67.69	68.99
HORVU1Hr1G076180.22	Barley	cytosol	71.72	67.3
CDY32219	Canola	cytosol	66.49	67.21
PGSC0003DMT400076471	Potato	cytosol	16.49	63.4
Solyc01g104930.1.1	Tomato	cytosol	15.55	63.39
KRH24495	Soybean	cytosol	19.84	63.25
CDY09518	Canola	cytosol	36.73	59.83
GSMUA_Achr6P26190_001	Banana	cytosol	10.05	44.38
Zm00001d000156_P001	Maize	cytosol	18.36	32.16
KRH24642	Soybean	cytosol, nucleus	19.44	12.07
KRH29644	Soybean	nucleus	19.03	11.87
KRH27288	Soybean	nucleus	18.77	7.71
KRH22028	Soybean	nucleus	18.9	7.56

Protein Annotations

Gene3D:1.10.8.60	EntrezGene:100779259	Gene3D:2.40.40.20	Gene3D:3.10.330.10	Gene3D:3.40.50.300	MapMan:50.3.6
InterPro:AAA+_ATPase	EMBL:ACUP02004653	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	InterPro:Asp_de-COase-like_dom_sf	InterPro:CDC48_domain_2-like_sf
InterPro:CDC4_N-term_subdom	InterPro:Cdc48_dom2	EnsemblPlantsGene:GLYMA_07G195900	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	UniProt:I1KLJ1	EnsemblPlants:KRH50033	ProteinID:KRH50033	ProteinID:KRH50033.1	InterPro:P-loop_NTPase
PFAM:PF00004	PFAM:PF02359	PFAM:PF02933	ScanProsite:PS00674	PANTHER:PTHR23078	PANTHER:PTHR23078:SF11
SMART:SM00382	SUPFAM:SSF50692	SUPFAM:SSF52540	SUPFAM:SSF54585	UniParc:UPI0002338066	SEG:seg

Description

hypothetical protein

Coordinates

chr7:-:36436750..36448821

Molecular Weight (calculated)

81931.3 Da

IEP (calculated)

5.901

GRAVY (calculated)

-0.133

Length

746 amino acids

Sequence
(BLAST)

001: MASRFGLSSS SSSASSMRVT NTPASDLALT NLAFCSPSDL RNFAVPGHNN LYLAAVADSF VLSLSAHDTI GSGQIALNAV QRRCAKVSSG DSVQVSRFVP
101: PEDFNLALLT LELEFVKKGS KSEQIDAVLL AKQLRKRFMN QVMTVGQKVL FEYHGNNYSF TVSNAAVEGQ EKSNSLERGM ISDDTYIVFE TSRDSGIKIV
201: NQREGATSNI FKQKEFNLQS LGIGGLSAEF ADIFRRAFAS RVFPPHVTSK LGIKHVKGML LYGPPGTGKT LMARQIGKIL NGKEPKIVNG PEVLSKFVGE
301: TEKNVRDLFA DAEQDQRTRG DESDLHVIIF DEIDAICKSR GSTRDGTGVH DSIVNQLLTK IDGVESLNNV LLIGMTNRKD MLDEALLRPG RLEVQVEISL
401: PDENGRLQIL QIHTNKMKEN SFLAADVNLQ ELAARTKNYS GAELEGVVKS AVSYALNRQL SLEDLTKPVE EENIKVTMDD FLNALHEVTS AFGASTDDLE
501: RCRLHGMVEC GDRHKHIYQR AMLLVEQVKV SKGSPLVTCL LEGSRGSGKT ALSATVGIDS DFPYVKIVSA ESMIGLHEST KCAQIIKVFE DAYKSPLSVI
601: ILDDIERLLE YVPIGPRFSN LISQTLLVLL KRLPPKGKKL MVIGTTSELD FLESIGFCDT FSVTYHIPTL NTTDAKKVLE QLNVFTDEDI DSAAEALNDM
701: PIRKLYMLIE MAAQGEHGGS AEAIFSGKEK ISIAHFYDCL QDVVRL

Best Arabidopsis Sequence Match ( AT4G04910.1 )
(BLAST)

001: MAGRYGSQVM TMTVTNTPSA DLAFTNLAYC SSSDLRQFSV PGSDLFLANV ADSFILSLCG HGSIRDGNIA LNAIQRRHAR VSTGDMVSVS RFVPPENFDL
101: AMLTLELEFV KKGTKSEQVD AALLSTQLKR KYTNQVLTVG QKATFEYHGT NYILTVNRAD VEGQDHTNGI ERGLLSKDTY IVFEASNASG IKIVNQREAA
201: SSNIFKHKEF NLESLGIGGL GAEFADIFRR AFASRVFPPH VTSRLGIKHV KGMLLFGPPG TGKTLMARQI GKMLNGKDPK IVNGPEVLSK FVGETEKNVR
301: DLFADAEQDQ RTLGDASELH VIIFDEIDAI CKSRGSTRDG TGVHDSIVNQ LLTKIDGVEA LNNVLLIGMT NRKDLLDEAL LRPGRLEVQV EISLPDEAGR
401: LQILQIHTNK MKENSFLGTD INLQELAART KNYSGAELEG VVKSATSYAL NRQLSMDDLT KPVEEENIKI TMEDFLHAIY EVQPAFGAST DDLERCRLNG
501: MVDCGHRHNH IYKRAMLLVE QVKVSTRSPL VTCLLEGPSG SGKTALAATI GIDSDFPYVK IVSAETMIGL SESTKCAHIV KVFEDAYKSP MSIIILDDIE
601: RLLEFIAIGP RFSNIISQTL MVLLKRLPPK GKKLLVFGTT SEVTFLESVG ISDCFSVTHS VPTLQKEDAK KVLNQLNLFS EDDVDSAAEA LNDMPIKKIY
701: MLIEMAAQGE NGGSAEAIYA GREKININHF YDCLGDFIRF TG

Arabidopsis Description

NSFNSF [Source:UniProtKB/TrEMBL;Acc:A0A178UTB9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.