Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P26250_001 | Banana | cytosol | 17.75 | 65.22 |
| KRH24495 | Soybean | cytosol | 26.04 | 18.8 |
| GSMUA_Achr8P27650_001 | Banana | cytosol | 50.89 | 11.51 |
| GSMUA_Achr9P05850_001 | Banana | cytosol | 49.7 | 11.31 |
| VIT_19s0014g02750.t01 | Wine grape | cytosol | 46.75 | 10.69 |
| KRH50033 | Soybean | endoplasmic reticulum, nucleus | 44.38 | 10.05 |
| KRH20460 | Soybean | endoplasmic reticulum | 43.79 | 9.97 |
| GSMUA_Achr10P... | Banana | nucleus | 12.43 | 1.95 |
| GSMUA_Achr11P... | Banana | nucleus | 11.24 | 1.59 |
| GSMUA_Achr1P13870_001 | Banana | nucleus, plastid | 10.06 | 0.96 |
| PGSC0003DMT400076471 | Potato | cytosol | 0.0 | 0.0 |
| Solyc01g104930.1.1 | Tomato | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P26190_001 | EnsemblPlants:GSMUA_Achr6T26190_001 | EnsemblPlantsGene:GSMUA_Achr6G26190_001 | Gene3D:3.40.50.300 | InterPro:P-loop_NTPase | PANTHER:PTHR23078 |
| PANTHER:PTHR23078:SF11 | SEG:seg | SUPFAM:SSF52540 | UniParc:UPI0002963A3C | UniProt:M0TAB4 | MapMan:35.1 |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G26190_001]
Coordinates
chr6:-:27042598..27045827
Molecular Weight (calculated)
18963.9 Da
IEP (calculated)
7.929
GRAVY (calculated)
-0.144
Length
169 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDERQNTQT YRVFEDAYKS QLSIIILDDI ERLLEYVVIG PCFSNLISQT LLVLLFHCAK GKNVLVLGTT SEMEFLESLG ICDAFSVTYH VPKLNKEDAK
101: KVFQAMIRGS ESNQLRAAMS LPGRWKDVYR SPIMEIPLDA SPGGVCGAQT LNVVRRSNPS RNRAVSGYK
101: KVFQAMIRGS ESNQLRAAMS LPGRWKDVYR SPIMEIPLDA SPGGVCGAQT LNVVRRSNPS RNRAVSGYK
001: MAGRYGSQVM TMTVTNTPSA DLAFTNLAYC SSSDLRQFSV PGSDLFLANV ADSFILSLCG HGSIRDGNIA LNAIQRRHAR VSTGDMVSVS RFVPPENFDL
101: AMLTLELEFV KKGTKSEQVD AALLSTQLKR KYTNQVLTVG QKATFEYHGT NYILTVNRAD VEGQDHTNGI ERGLLSKDTY IVFEASNASG IKIVNQREAA
201: SSNIFKHKEF NLESLGIGGL GAEFADIFRR AFASRVFPPH VTSRLGIKHV KGMLLFGPPG TGKTLMARQI GKMLNGKDPK IVNGPEVLSK FVGETEKNVR
301: DLFADAEQDQ RTLGDASELH VIIFDEIDAI CKSRGSTRDG TGVHDSIVNQ LLTKIDGVEA LNNVLLIGMT NRKDLLDEAL LRPGRLEVQV EISLPDEAGR
401: LQILQIHTNK MKENSFLGTD INLQELAART KNYSGAELEG VVKSATSYAL NRQLSMDDLT KPVEEENIKI TMEDFLHAIY EVQPAFGAST DDLERCRLNG
501: MVDCGHRHNH IYKRAMLLVE QVKVSTRSPL VTCLLEGPSG SGKTALAATI GIDSDFPYVK IVSAETMIGL SESTKCAHIV KVFEDAYKSP MSIIILDDIE
601: RLLEFIAIGP RFSNIISQTL MVLLKRLPPK GKKLLVFGTT SEVTFLESVG ISDCFSVTHS VPTLQKEDAK KVLNQLNLFS EDDVDSAAEA LNDMPIKKIY
701: MLIEMAAQGE NGGSAEAIYA GREKININHF YDCLGDFIRF TG
101: AMLTLELEFV KKGTKSEQVD AALLSTQLKR KYTNQVLTVG QKATFEYHGT NYILTVNRAD VEGQDHTNGI ERGLLSKDTY IVFEASNASG IKIVNQREAA
201: SSNIFKHKEF NLESLGIGGL GAEFADIFRR AFASRVFPPH VTSRLGIKHV KGMLLFGPPG TGKTLMARQI GKMLNGKDPK IVNGPEVLSK FVGETEKNVR
301: DLFADAEQDQ RTLGDASELH VIIFDEIDAI CKSRGSTRDG TGVHDSIVNQ LLTKIDGVEA LNNVLLIGMT NRKDLLDEAL LRPGRLEVQV EISLPDEAGR
401: LQILQIHTNK MKENSFLGTD INLQELAART KNYSGAELEG VVKSATSYAL NRQLSMDDLT KPVEEENIKI TMEDFLHAIY EVQPAFGAST DDLERCRLNG
501: MVDCGHRHNH IYKRAMLLVE QVKVSTRSPL VTCLLEGPSG SGKTALAATI GIDSDFPYVK IVSAETMIGL SESTKCAHIV KVFEDAYKSP MSIIILDDIE
601: RLLEFIAIGP RFSNIISQTL MVLLKRLPPK GKKLLVFGTT SEVTFLESVG ISDCFSVTHS VPTLQKEDAK KVLNQLNLFS EDDVDSAAEA LNDMPIKKIY
701: MLIEMAAQGE NGGSAEAIYA GREKININHF YDCLGDFIRF TG
Arabidopsis Description
NSFNSF [Source:UniProtKB/TrEMBL;Acc:A0A178UTB9]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.