Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plasma membrane 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY39223 | Canola | cytosol, mitochondrion | 1.49 | 9.65 |
| CDY09518 | Canola | cytosol | 5.03 | 8.08 |
| Bra033538.1-P | Field mustard | cytosol | 6.39 | 7.18 |
| Bra000808.1-P | Field mustard | cytosol | 6.39 | 6.58 |
| CDY34435 | Canola | cytosol | 6.52 | 6.56 |
| CDY16637 | Canola | plastid | 6.52 | 6.5 |
| Solyc01g104920.2.1 | Tomato | plastid | 6.11 | 6.5 |
| CDY21320 | Canola | plastid | 6.25 | 6.44 |
| CDX90880 | Canola | plastid | 6.39 | 6.41 |
| Bra029529.1-P | Field mustard | plastid | 6.39 | 6.39 |
| CDY32219 | Canola | cytosol | 6.39 | 6.37 |
| CDX86132 | Canola | plastid | 6.39 | 6.37 |
| AT4G04910.1 | Thale cress | plastid | 6.39 | 6.33 |
| Solyc01g104930.1.1 | Tomato | cytosol | 1.22 | 4.92 |
| Solyc07g062760.1.1 | Tomato | nucleus | 6.66 | 4.44 |
| Solyc04g076180.2.1 | Tomato | nucleus | 6.52 | 4.02 |
| GSMUA_Achr6P26250_001 | Banana | cytosol | 0.0 | 0.0 |
Protein Annotations
| MapMan:35.2 | GO:GO:0003674 | GO:GO:0003682 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 | GO:GO:0016887 |
| GO:GO:0031936 | GO:GO:0040029 | GO:GO:0042393 | GO:GO:0045944 | UniProt:K4CGW0 | PANTHER:PTHR23069 |
| PANTHER:PTHR23069:SF3 | EnsemblPlantsGene:Solyc07g062770.2 | EnsemblPlants:Solyc07g062770.2.1 | UniParc:UPI000276BA42 | SEG:seg | : |
Description
No Description!
Coordinates
chr7:+:65454879..65457840
Molecular Weight (calculated)
82402.6 Da
IEP (calculated)
5.478
GRAVY (calculated)
-0.387
Length
736 amino acids
Sequence
(BLAST)
(BLAST)
001: MRLNMRCASV DKCMIFMPRV DLWAMETSDL VCQDDGSSLV NPESLGKDKE RSFNHSAEQA GDALKRASYL WSSFVEQVES ICMATSLMLL ATSDVPLEAL
101: PIRVRQFFKS QALNNSILFP LEDSVSRFSE QLDRNFDEEC LIDSSAAKLS KDLAQHFIQL IHRTNHVHLQ TCNDEASDKS EGDAAIECQR SDLRSTIEPV
201: NKQCPLPTSA IANSRNVKGK SNLMLAITTF GYQILRYPHF AELCWFTSKL REGPCVDING PWKGWPFNSC VIRPVISIGN VTLPLNNNKG KEKYCMVRGL
301: IAIGLLAYRG KYSSVREVSA EVRKVLELLV EQINDKIRNG RDRYQFVRLL SQVAYLDDLV NSWVYSLQSL GGETQLAEAN TKISCAGLPE SADAPENTPL
401: REGGCKPEEF LEKAETLETC RPELTAENCT PAIPEAYGVS NFPDIGAVER EPPHLVAVNH SVPSRQVTSS EHSVLNDNSC MPDDTDKHLG NIGDCVLKRQ
501: SNGLIQEDGS NHSRYGRGID EHSSYTLSSN SNGRLSTPNN LQIGDSNQKS VGNSLGLECS NISSNLSIDS SIVCLYRCCP QCLLNLQRTL KKMLSYEWGL
601: KKAEFIVEDA YDFLASLAAN LHSALRVWLL ADDSTSFDEK RVQERYGESS ECKKTNFCEC RNLENRLIKL IECNCHLKSS DQTEKCKSSQ NLSQDFIFRD
701: GVLTNLDEKN VSTHCKFETL CLCSLVDWIE MRKKNT
101: PIRVRQFFKS QALNNSILFP LEDSVSRFSE QLDRNFDEEC LIDSSAAKLS KDLAQHFIQL IHRTNHVHLQ TCNDEASDKS EGDAAIECQR SDLRSTIEPV
201: NKQCPLPTSA IANSRNVKGK SNLMLAITTF GYQILRYPHF AELCWFTSKL REGPCVDING PWKGWPFNSC VIRPVISIGN VTLPLNNNKG KEKYCMVRGL
301: IAIGLLAYRG KYSSVREVSA EVRKVLELLV EQINDKIRNG RDRYQFVRLL SQVAYLDDLV NSWVYSLQSL GGETQLAEAN TKISCAGLPE SADAPENTPL
401: REGGCKPEEF LEKAETLETC RPELTAENCT PAIPEAYGVS NFPDIGAVER EPPHLVAVNH SVPSRQVTSS EHSVLNDNSC MPDDTDKHLG NIGDCVLKRQ
501: SNGLIQEDGS NHSRYGRGID EHSSYTLSSN SNGRLSTPNN LQIGDSNQKS VGNSLGLECS NISSNLSIDS SIVCLYRCCP QCLLNLQRTL KKMLSYEWGL
601: KKAEFIVEDA YDFLASLAAN LHSALRVWLL ADDSTSFDEK RVQERYGESS ECKKTNFCEC RNLENRLIKL IECNCHLKSS DQTEKCKSSQ NLSQDFIFRD
701: GVLTNLDEKN VSTHCKFETL CLCSLVDWIE MRKKNT
0001: MKSSHEVTKN HSGSPSGKKS KKLAAICEEE YKKNHGESQD RDGGSGLACA DSELRRSSRV RKIPSILDAS PPPPKKRQRF NKSSSSIEKG KRNEDGDSDA
0101: PDGWKSRLRS RRKKNVGFQA SGRQRRVVKG KRKLVFRNRA CELSEKAEAS DREEEKGALK GGKLNKAKKP VDVKESESSE DGGKESDTSN SEDVQKESDT
0201: SNSEDESASE SEESMQADSA AREKYQEKKA TKRSVFLESE NEAEVDRTET ESEDGTDSTD NEIDDSDEEG ESETQCSAEK TGSETEANVE EMRADTNVTM
0301: EAVQNESRNQ MEELENEIEM GVEDEKKEMS VIVSESGNGT GIREDENKEM DVIVSESGNG TGILEGENKK MEVMVSGSGN GTGIREDDSD FAAKVKNREG
0401: DTLHPELLGE ASTEINESLK QNDDIGEQGV SRTPSNNKTK EHNEFLDRGG ESVEMPDELP IQNETCKKAV DSVSTSSDRL GKPLFKQTRR CGLCGVGTDG
0501: KLPKKLMQDN GDSDVEAPSG SSSSEEQKYD ILDGFGDDPG WLGRLLGPIN DRYGISGTWV HQNCAVWSPE VYFAGVGCLK NIRAALFRGR SLKCTRCDRP
0601: GATTGCRPCA RANGCIFDHR KFLIACTDHR HHFQPHGRQC QVRMTKMKTK RMRLEMKKHS NDAWRKDVEA EEKWFEKCGE DEEFLKRESK RLHRDLLRVA
0701: PEYIGGSDSE SGKAFEGWDS VAGLEGVTQC MKEVVLIPLL YPEFFDNLGL TPPRGILLHG HPGTGKTLVV RALIGSLARG NRRIAYFARK GADCLGKYVG
0801: DAERQLRLLF QVAEKCQPSI IFFDEIDGLA PKRSRQQDQT HSSVVSTLLA LLDGLKSRGS VVVIGATNYP DAIDPALRRP GRFDREIYFP LPSVDDRAAI
0901: ISLHTRKWPK PVSGYLLKWI AKETAGFAGA DIQALCTQAA MIALNRSFPL QESLAAAELG VSSSNRAALP SFSVEERDWL EALSRSPPPC SRRGAGIAAS
1001: DIFSSPLPTY LVPSLLPPLC SLLVALHLDE RIFLPPLLSK AAVDVQNVIR SALSDKKITE GCWWSHVDTL LHEVDVVKDI VQRLSCTGIL DGGCDLVGSV
1101: ASIPGTGDCS LGSAKFMVPR VCRHPGVLGN ASVESTSKSG FQLLIAGGPK SGQRHLASCV LHCFIGNAEM LKIDTATISQ EGNGDLVLGV THLLIKCASK
1201: KSCVVFMPRV DLWAVKTETP LNEEVECDDD SVQENCSEMG EEKALQNGVR VSHAWNTFFE QVETLRVSTK MMILATSGMP YKLLPPKIQQ FFKTDLSKEC
1301: QPTMSEAVPQ FNVQVVESSD QDIAIDLSAT ELLRRAIQVF LHLVHQGSHT HCGLKKKYKG EDLDQGCRDA APQNNTDHRA GEEAVVKSKR LDDGSLKVPP
1401: LPININVKPK SSLQLAVSTF GYQILQYPQF AELCWVTSKL KEGPSADVSG PWRGWPFNSC ITRPCNSSEQ TITSSDSNNV KGKDSTGIVR GLTAVGLSAY
1501: RGTYISLREV SFEVRKVLEL LVGRISVKIN AGKDRCRYIR ILSQVAYLED LVNSWVYAMR SFESTTQTES TNPLPCSVVN PSVRNEPTEQ GTSDQLKGSE
1601: EDLKEDTQNM NCPDPIASSN LTDNHQPVVE IANGHNGTNH ESFLEDTGHL TTHSTDGLTL VKENVDVISD TEMMIEDSGV NPFRQAVLLD LNSPAADHEQ
1701: NETPHGSCEV ETTGTVISLQ EKADSLDNPN GSGDSNSISL EDPHKSADSN NGKAWDGVHG LESANNMPEP VEQVETTGRT NPQDDPSLVC LYRCCSQCVS
1801: ILQDSMHKLV TRELRLGRSS ITTEGIHDAV SSLSVELISA VRKFISVKNN GTMQEAKVKD HEECPENEAC FCKRLSGNFL ASVECCSHSA EMQGSLDEGN
1901: TYRRPKTWLE PVFVFKDGIL VPVSTEDDRS LHCKYDSFCL GSLIELIATE MKPF
0101: PDGWKSRLRS RRKKNVGFQA SGRQRRVVKG KRKLVFRNRA CELSEKAEAS DREEEKGALK GGKLNKAKKP VDVKESESSE DGGKESDTSN SEDVQKESDT
0201: SNSEDESASE SEESMQADSA AREKYQEKKA TKRSVFLESE NEAEVDRTET ESEDGTDSTD NEIDDSDEEG ESETQCSAEK TGSETEANVE EMRADTNVTM
0301: EAVQNESRNQ MEELENEIEM GVEDEKKEMS VIVSESGNGT GIREDENKEM DVIVSESGNG TGILEGENKK MEVMVSGSGN GTGIREDDSD FAAKVKNREG
0401: DTLHPELLGE ASTEINESLK QNDDIGEQGV SRTPSNNKTK EHNEFLDRGG ESVEMPDELP IQNETCKKAV DSVSTSSDRL GKPLFKQTRR CGLCGVGTDG
0501: KLPKKLMQDN GDSDVEAPSG SSSSEEQKYD ILDGFGDDPG WLGRLLGPIN DRYGISGTWV HQNCAVWSPE VYFAGVGCLK NIRAALFRGR SLKCTRCDRP
0601: GATTGCRPCA RANGCIFDHR KFLIACTDHR HHFQPHGRQC QVRMTKMKTK RMRLEMKKHS NDAWRKDVEA EEKWFEKCGE DEEFLKRESK RLHRDLLRVA
0701: PEYIGGSDSE SGKAFEGWDS VAGLEGVTQC MKEVVLIPLL YPEFFDNLGL TPPRGILLHG HPGTGKTLVV RALIGSLARG NRRIAYFARK GADCLGKYVG
0801: DAERQLRLLF QVAEKCQPSI IFFDEIDGLA PKRSRQQDQT HSSVVSTLLA LLDGLKSRGS VVVIGATNYP DAIDPALRRP GRFDREIYFP LPSVDDRAAI
0901: ISLHTRKWPK PVSGYLLKWI AKETAGFAGA DIQALCTQAA MIALNRSFPL QESLAAAELG VSSSNRAALP SFSVEERDWL EALSRSPPPC SRRGAGIAAS
1001: DIFSSPLPTY LVPSLLPPLC SLLVALHLDE RIFLPPLLSK AAVDVQNVIR SALSDKKITE GCWWSHVDTL LHEVDVVKDI VQRLSCTGIL DGGCDLVGSV
1101: ASIPGTGDCS LGSAKFMVPR VCRHPGVLGN ASVESTSKSG FQLLIAGGPK SGQRHLASCV LHCFIGNAEM LKIDTATISQ EGNGDLVLGV THLLIKCASK
1201: KSCVVFMPRV DLWAVKTETP LNEEVECDDD SVQENCSEMG EEKALQNGVR VSHAWNTFFE QVETLRVSTK MMILATSGMP YKLLPPKIQQ FFKTDLSKEC
1301: QPTMSEAVPQ FNVQVVESSD QDIAIDLSAT ELLRRAIQVF LHLVHQGSHT HCGLKKKYKG EDLDQGCRDA APQNNTDHRA GEEAVVKSKR LDDGSLKVPP
1401: LPININVKPK SSLQLAVSTF GYQILQYPQF AELCWVTSKL KEGPSADVSG PWRGWPFNSC ITRPCNSSEQ TITSSDSNNV KGKDSTGIVR GLTAVGLSAY
1501: RGTYISLREV SFEVRKVLEL LVGRISVKIN AGKDRCRYIR ILSQVAYLED LVNSWVYAMR SFESTTQTES TNPLPCSVVN PSVRNEPTEQ GTSDQLKGSE
1601: EDLKEDTQNM NCPDPIASSN LTDNHQPVVE IANGHNGTNH ESFLEDTGHL TTHSTDGLTL VKENVDVISD TEMMIEDSGV NPFRQAVLLD LNSPAADHEQ
1701: NETPHGSCEV ETTGTVISLQ EKADSLDNPN GSGDSNSISL EDPHKSADSN NGKAWDGVHG LESANNMPEP VEQVETTGRT NPQDDPSLVC LYRCCSQCVS
1801: ILQDSMHKLV TRELRLGRSS ITTEGIHDAV SSLSVELISA VRKFISVKNN GTMQEAKVKD HEECPENEAC FCKRLSGNFL ASVECCSHSA EMQGSLDEGN
1901: TYRRPKTWLE PVFVFKDGIL VPVSTEDDRS LHCKYDSFCL GSLIELIATE MKPF
Arabidopsis Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LIM2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.