Factsheet for Bra032449.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06186	Canola	nucleus	96.55	97.75
CDY10003	Canola	nucleus	95.23	96.66
Bra015464.1-P	Field mustard	nucleus	91.04	91.72
AT1G05910.1	Thale cress	nucleus	88.98	89.42
VIT_05s0102g00260.t01	Wine grape	nucleus	69.9	69.79
Solyc04g076180.2.1	Tomato	nucleus	67.85	69.1
KRH24642	Soybean	cytosol, nucleus	67.6	68.44
KRH29644	Soybean	nucleus	67.02	68.14
TraesCS5B01G299500.1	Wheat	nucleus	61.35	62.01
TraesCS5A01G302000.1	Wheat	nucleus	61.18	62.0
Zm00001d021145_P003	Maize	plasma membrane	60.69	61.91
EER97044	Sorghum	cytosol	60.94	61.9
GSMUA_Achr10P...	Banana	nucleus	54.69	61.8
TraesCS5D01G306800.1	Wheat	nucleus	61.1	61.76
HORVU5Hr1G078780.1	Barley	nucleus	61.27	61.52
Os09t0515100-02	Rice	cytosol	60.2	61.1
GSMUA_Achr11P...	Banana	nucleus	57.07	58.03
Bra000808.1-P	Field mustard	cytosol	11.84	20.17
Bra033538.1-P	Field mustard	cytosol	10.61	19.69
Bra029529.1-P	Field mustard	plastid	11.84	19.57
Bra001584.1-P	Field mustard	nucleus	19.49	12.52

Protein Annotations

Gene3D:1.10.8.60	Gene3D:1.20.920.10	Gene3D:3.40.50.300	MapMan:35.1	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS
InterPro:ATPase_AAA_core	EnsemblPlantsGene:Bra032449	EnsemblPlants:Bra032449.1	EnsemblPlants:Bra032449.1-P	InterPro:Bromodomain	InterPro:Bromodomain-like_sf
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	InterPro:IPR001487
InterPro:IPR036427	UniProt:M4EUG7	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF00439	PRINTS:PR00503
ScanProsite:PS00674	PFscan:PS50014	PANTHER:PTHR23069	PANTHER:PTHR23069:SF0	SMART:SM00297	SMART:SM00382
SUPFAM:SSF47370	SUPFAM:SSF52540	UniParc:UPI0002543528	SEG:seg	:	:

Description

AT1G05910 (E=0.0) | cell division cycle protein 48-related / CDC48-related

Coordinates

chrA09:-:36112196..36117064

Molecular Weight (calculated)

134650.0 Da

IEP (calculated)

5.213

GRAVY (calculated)

-0.599

Length

1216 amino acids

Sequence
(BLAST)

0001: MLPKGLSQGD ETDAKPVRSS DRLRRRPRLY GRSCYYYSPN MVHNRKRKNT KTRTAASQIA KMLHKGNKPA RASNAAPDAS DLRRSTRKRR ISVNLEDYTD
0101: SSGGEDEDMM SPAYRTSRSR VNNGVHRNFS TSKSRKTMEA ESAPRREGLR PRRSKILANK RLKTESGANR DSSEEKDGQD ETENGNELDD HDADDGENEV
0201: EGEDEGNGED EGDGEDEEEE EDGDDDVDEE QEGRKRYDLR NRDEVRRMPT EEFNKQQQPR SPRRVLHQGM GTRAGRDVRR GGSRLHKRHR STRTDDSDDS
0301: LLVDELDQGL AIPWARGGNR SGPPWLFGGM DMHGSSSLGL NVGASGWGHQ SDGLTALTSG VQTAGPSSKG GADIQPLQIN EDINFDDIGG LSEYINDLKE
0401: MVFFPLLYPE FFASYNITPP RGVLLCGPPG TGKTLIARAL ACAASKAGQK VSFYMRKGAD VLSKWVGEAE RQLKLLFEEA QRNQPSIIFF DEIDGLAPVR
0501: SSKQEQIHNS IVSTLLELMD GLDSRGQVVL IGATNRVDAI DGALRRPGRF DREFTFSLPG CEARAEILDI HTRKWKNPPT MELKEELAAS CVGYCGADLK
0601: ALCTEAAIRA FREKYPQVYT SDDKYAIDVG LVKVGKSHFV EAMSAITPAA HRGSVVQSRP LSPVVLPCLH RHLLKSMSLI SDIFPSSAMS SEFTKLSMLS
0701: FGSAIPLVYR PRLLLLGGEG VGLDHLGPAI LHELEKFPIH SLGLPSLLSD PGAKTPEEAL VHIFTEARRT TPSILYIPMF NNWWENAHEQ LRAVFLTLLE
0801: ELPSNLPILL LATSYGELSD IEDQPVFDNR SVYTVDKPSS EDRSLFFDRL IEAALSVISG LNGKPDGSQA LPELPKVVKE PTGPKPAEIK AKVEAEQHAL
0901: RRLRMCLRDV CNRILYDKRF SAFHFPVTDE DAPNYRSIIQ NPMDTATLLQ RVDAGQYLTC SPFLQDVDLI VKNAKAYNGD DYAGARIVSR AYELRDVVLG
1001: MLSQMDPALL TYCDKIAAQG GPSQIPDDLS GSILGLAPVV QMGTVTRSSA RLRNLQPEVN IDRDYEGLKM PKKTADVVFT DSAADKHQDP DVEMTSVKAA
1101: GNSNSPAPCS ADGDEEDQSE QPSRKEEETC GGEVIGDCSR DSVKSDEDIS SGIESVKGML MERTENYSIP QMERVYTRIM KGVLETLEKG LSDDDQSPKH
1201: SILRFLSEFA QLQANF

Best Arabidopsis Sequence Match ( AT1G05910.1 )
(BLAST)

0001: MHPKRSSQGD GSVTKPVRTS DRLRRRPKLH GRSYLYYSSP NMLHNRKRNT KTRTAASQIA KMLHKGNRPA RASNAAPIAS DLRRSTRKRR ISVNLEDYTD
0101: SSGAEDEDMM SPAYRTLRRR VHKNFSTSKS RKDMDAELAP RREGLRPRRS TTIANKRLKT ESGADQDTSE EKDGQDETEN GNELDDADDG ENEVEAEDEG
0201: NGEDEGDGED EGEEDGDDDE EGDEEQEGRK RYDLRNRAEV RRMPTGEINK QQQPRSPRRV LHQGMGTRVG RDGRRGGSRP HKRHRFTRTD DSDDSLLVDE
0301: LDQGPAIPWA RGGNRSGAPW LFGGLDTYGS SSLGLNVGAS GWGHQSDGLA ALTSGVQTAG PSSKGGADIQ PLQINEDINF DDIGGLSEYI NDLKEMVFFP
0401: LLYPEFFASY SITPPRGVLL CGPPGTGKTL IARALACAAS KAGQKVSFYM RKGADVLSKW VGEAERQLKL LFEEAQRNQP SIIFFDEIDG LAPVRSSKQE
0501: QIHNSIVSTL LALMDGLDSR GQVVLIGATN RVDAIDGALR RPGRFDREFN FSLPGCEARA EILDIHTRKW KHPPTRELKE ELAATCVGYC GADLKALCTE
0601: AAIRAFREKY PQVYTSDDKY AIDVGLVNVE KSHFVEAMSA ITPAAHRGSV VQSRPLSPVV LPCLHRHLLE SMSLISDIFP SSATSSELTK LSILTFGSAI
0701: PLVYRPRLLL LGGEGVGLDH LGPAILHELE KFPIHSLGLP SLLSDPGAKT PEEALVHIFS EARRTTPSIL YIPMFNNWWE NAHEQLRAVF LTLLEELPSN
0801: LPILLLATSY GELSDMEEQS VFDNRSVYTV DKPSSEDRSL FFDRLIEAAL SVISGLNGKP DGPQPLPELP KVPKEPTGPK PAEVKAKVEA EQHALRRLRM
0901: CLRDVCNRIL YDKRFSAFHF PVTDEDAPNY RSIIQIPMDT ATLLQRVDTG QYLTCTPFLQ DVDLIVRNAK AYNGDDYAGA RIVSRAYELR DVVHGMLSQM
1001: DPALLTYCDK IAAEGGPSLI PDDLSGSILG LAPVVQMGTV TRTSARLRNV QPEVNLDRDY EGLKKPKKTT DAVSIDSAAD KSQNQDSGQE MPSPDAANPQ
1101: SAAPSPTDGD REDQSEPPSK EASAEDMSGD SCKGPAAKSD KEISSRTESV KGVFMERTDN YSIPQMERLY TRIMKGVLET LDKGLRDDDN NPKHSILRFL
1201: SEFAQHQANF

Arabidopsis Description

ATPase family AAA domain-containing protein At1g05910 [Source:UniProtKB/Swiss-Prot;Acc:F4IAE9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.