CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67637	Canola	cytosol	93.84	94.81
CDX76057	Canola	cytosol	94.52	94.52
AT3G56190.1	Thale cress	cytosol	93.49	94.46
CDY27237	Canola	cytosol	93.49	94.46
CDX72160	Canola	cytosol	93.15	94.12
CDY32002	Canola	cytosol	83.9	88.45
KRG97663	Soybean	endoplasmic reticulum	75.0	75.78
KRH31211	Soybean	endoplasmic reticulum, nucleus, plasma membrane	73.97	74.74
KRH14886	Soybean	endoplasmic reticulum	72.26	73.01
KRH73230	Soybean	cytosol	71.92	72.66
Solyc06g050770.2.1	Tomato	plastid	71.23	71.97
PGSC0003DMT400046100	Potato	cytosol	70.89	71.63
VIT_13s0067g02210.t01	Wine grape	extracellular	69.18	69.9
PGSC0003DMT400030420	Potato	cytosol	68.15	68.86
Solyc05g052310.2.1	Tomato	plastid	55.14	66.26
GSMUA_Achr11P...	Banana	cytosol	65.07	65.74
GSMUA_Achr10P...	Banana	cytosol	64.38	65.05
GSMUA_Achr5P00900_001	Banana	cytosol	63.36	64.01
Os08t0282400-01	Rice	plasma membrane	61.3	61.94
TraesCS7A01G292400.1	Wheat	golgi	58.9	59.52
EER96420	Sorghum	cytosol	13.01	58.46
TraesCS7D01G284600.1	Wheat	cytosol	59.25	57.48
TraesCS7B01G182700.2	Wheat	cytosol	59.25	57.48
Zm00001d033092_P001	Maize	cytosol	56.85	57.44
PGSC0003DMT400074763	Potato	cytosol	9.93	52.73
Zm00001d049982_P005	Maize	cytosol	60.62	50.86
PGSC0003DMT400089090	Potato	cytosol	52.74	50.16
PGSC0003DMT400043844	Potato	cytosol	35.27	49.52
TraesCS7B01G340300.1	Wheat	cytosol	48.29	48.12
AT3G56450.1	Thale cress	cytosol	56.85	43.57

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:A0A078JAK4	UniProt:A0A078JAK4	EnsemblPlants:CDY62813	ProteinID:CDY62813
ProteinID:CDY62813.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	EnsemblPlantsGene:GSBRNA2T00037630001
InterPro:IPR011990	InterPro:IPR019734	InterPro:NSF_attach	PFAM:PF14938	PRINTS:PR00448	PFscan:PS50005
PANTHER:PTHR13768	PANTHER:PTHR13768:SF8	SMART:SM00028	SUPFAM:SSF48452	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat
UniParc:UPI0004EF1BE4	SEG:seg	:	:	:	:

Description

BnaC04g55510DBnaC04g55510D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JAK4]

Coordinates

chrLK034197:+:32425..34463

Molecular Weight (calculated)

33140.0 Da

IEP (calculated)

4.970

GRAVY (calculated)

-0.519

Length

292 amino acids

Sequence
(BLAST)

001: MGDHLVRAEE FEKKAEKKLN GWGIFGSKYE DAADLLEKAA NSYKLAKSWD QAGKAYLKLA DCHLKSDSKH DAANAYAEAA KCYKKVDTNE AASCLERAVN
101: IFCEIGRLNM AARYYKEIAE HYEADQKIDQ AISYFEKAAE FFQNEEVTTS ANQCNLKVAQ YAAQLEQYEK AIKIYEEIAC QSLNNNLLKY GVKGHLLNAG
201: MCHLCKPDVV SITNALEKYQ DLDPTFTGTR ECKFLSDLAS AIDEEDIAKF TDVVKEFSSL NLYCWQDSWK TTMLLRVKEK LKAKELEEDD LT

Best Arabidopsis Sequence Match ( AT3G56190.1 )
(BLAST)

001: MGDHLVRAEE FEKKAEKKLN GWGIFGSKYE DAADLLEKAA NSYKLAKSWD QAGKAYLKLA DCHLKSDSKH DAANAYAEAA KCYKKVDTNE AASCLERAVN
101: IFCEIGRLNM AARYYKEIAE YYESDQKFEQ AIAYFEKAAE FFQNEEVTTS ANQCNLKVAQ YAAQLEQYEK AIKIYEDIAR HSLNNNLLKY GVKGHLLTAG
201: MCHLCKADVV SITNALEKYQ DLDPTFTGTR ECKFLADLAS AIDEEDIAKF TDVVKEFDSM TPLDSWKTTM LLRVKEKLKA KELEEDDLT

Arabidopsis Description

ASNAP2At3g56190 [Source:UniProtKB/TrEMBL;Acc:Q29Q46]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.