Factsheet for VIT_13s0067g02210.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
golgi 2
cytosol 2
endoplasmic reticulum 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

extracellular: 27664331

msms PMID: 27664331 doi

P Pérez-Bermúdez, J Blesa, JM Soriano, A Marcilla

Departament de Biologia Vegetal, Facultat de Farmàcia, Universitat de València, Burjassot, Valencia, Spain., Grupo de Ciencias de la Alimentación Basada en la Evidencia y Experimentación (CiAlBEx), Instituto de Ciencias de los Materiales, Parque Científico, Universitat de València, Paterna, Spain; Unidad Mixta de Investigación en Endocrinología, Nutrición y Dietética Clínica, Instituto de Investigación Sanitaria La Fe-Universitat de València, Valencia, Spain., Unidad Mixta de Investigación en Endocrinología, Nutrición y Dietética Clínica, Instituto de Investigación Sanitaria La Fe-Universitat de València, Valencia, Spain; Àrea de Parasitologia, Departament de Farmàcia i Tecnologia Farmacèutica i Parasitologia, Universitat de València, Burjassot, Valencia, Spain. Electronic address: antonio.marcilla@uv.es.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0058g00820.t01	Wine grape	cytosol	78.89	78.89
KRG97663	Soybean	endoplasmic reticulum	78.2	78.2
PGSC0003DMT400046100	Potato	cytosol	77.85	77.85
Solyc06g050770.2.1	Tomato	plastid	77.85	77.85
KRH31211	Soybean	endoplasmic reticulum, nucleus, plasma membrane	77.51	77.51
PGSC0003DMT400030420	Potato	cytosol	75.43	75.43
KRH14886	Soybean	endoplasmic reticulum	73.7	73.7
GSMUA_Achr11P...	Banana	cytosol	72.66	72.66
GSMUA_Achr10P...	Banana	cytosol	72.66	72.66
Solyc05g052310.2.1	Tomato	plastid	60.9	72.43
AT3G56190.1	Thale cress	cytosol	71.97	71.97
CDX76057	Canola	cytosol	72.32	71.58
Bra014705.1-P	Field mustard	cytosol	71.97	71.23
CDX67637	Canola	cytosol	70.59	70.59
Bra003231.1-P	Field mustard	cytosol	70.59	70.59
KRH73230	Soybean	cytosol	70.59	70.59
CDY27237	Canola	cytosol	70.24	70.24
CDX72160	Canola	cytosol	70.24	70.24
Bra007224.1-P	Field mustard	cytosol	70.24	70.24
GSMUA_Achr5P00900_001	Banana	cytosol	69.9	69.9
CDY62813	Canola	cytosol	69.9	69.18
CDY32002	Canola	cytosol	64.36	67.15
Os08t0282400-01	Rice	plasma membrane	64.71	64.71
TraesCS7A01G292400.1	Wheat	golgi	64.01	64.01
TraesCS7D01G284600.1	Wheat	cytosol	64.01	61.46
TraesCS7B01G182700.2	Wheat	cytosol	63.67	61.13
Zm00001d033092_P001	Maize	cytosol	59.17	59.17
EER96420	Sorghum	cytosol	12.46	55.38
Zm00001d049982_P005	Maize	cytosol	65.74	54.6
PGSC0003DMT400074763	Potato	cytosol	10.38	54.55
PGSC0003DMT400089090	Potato	cytosol	55.71	52.44
TraesCS7B01G340300.1	Wheat	cytosol	52.6	51.88
PGSC0003DMT400043844	Potato	cytosol	36.33	50.48
AT3G56450.1	Thale cress	cytosol	46.71	35.43

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100232837	wikigene:100232837	MapMan:35.1	EMBL:AB001375	ProteinID:BAA19246
ProteinID:BAA19246.1	ProteinID:CBI25403	ProteinID:CBI25403.3	ncoils:Coil	UniProt:D7T4H1	EMBL:FN595514
GO:GO:0003674	GO:GO:0005483	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005774	GO:GO:0006810	GO:GO:0006886
GO:GO:0008150	GO:GO:0009987	GO:GO:0015031	GO:GO:0016020	GO:GO:0016043	GO:GO:0016192
GO:GO:0019905	GO:GO:0031201	GO:GO:0035494	GO:GO:0061025	InterPro:IPR011990	InterPro:IPR019734
InterPro:NSF_attach	PFAM:PF14938	PRINTS:PR00448	PFscan:PS50005	PANTHER:PTHR13768	PANTHER:PTHR13768:SF8
EntrezGene:SNAP-ALPHA	wikigene:SNAP-ALPHA	SUPFAM:SSF48452	TIGR:TC54776	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat
UniParc:UPI00015CA976	ArrayExpress:VIT_13s0067g02210	EnsemblPlantsGene:VIT_13s0067g02210	EnsemblPlants:VIT_13s0067g02210.t01	unigene:Vvi.115	:

Description

No Description!

Coordinates

chr13:-:1243355..1248812

Molecular Weight (calculated)

32576.2 Da

IEP (calculated)

4.659

GRAVY (calculated)

-0.493

Length

289 amino acids

Sequence
(BLAST)

001: MADNIQRGEE FEKKAEKKIS GWGLFGSKYE DAADFYDKAA NCFKLAKSWD RAGSTYVKLS NCYTKLDSKH EAAQAYADAG HCYKKTSAKE AISCLEQAAN
101: LFLDNGRFNM AGKYYKEIAE LYELEQNFEQ AIIYFEKAAD IYQSEEATTA ANQCNAKVAQ FAAQLEQYQK AIQIYEDIGR QSLNNNLLKY GVKGHLLNAG
201: ICQLCKGDVV AITNALDRYQ EMDPTFSGTR EYKLLVDLAA AVDEEDVVKF TDAVKEFDSM TQLDAWKTTL LLRVKEAIKA KELEEDDLT

Best Arabidopsis Sequence Match ( AT3G56190.1 )
(BLAST)

001: MGDHLVRAEE FEKKAEKKLN GWGIFGSKYE DAADLLEKAA NSYKLAKSWD QAGKAYLKLA DCHLKSDSKH DAANAYAEAA KCYKKVDTNE AASCLERAVN
101: IFCEIGRLNM AARYYKEIAE YYESDQKFEQ AIAYFEKAAE FFQNEEVTTS ANQCNLKVAQ YAAQLEQYEK AIKIYEDIAR HSLNNNLLKY GVKGHLLTAG
201: MCHLCKADVV SITNALEKYQ DLDPTFTGTR ECKFLADLAS AIDEEDIAKF TDVVKEFDSM TPLDSWKTTM LLRVKEKLKA KELEEDDLT

Arabidopsis Description

ASNAP2At3g56190 [Source:UniProtKB/TrEMBL;Acc:Q29Q46]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.