CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
vacuole 1
cytosol 2
endoplasmic reticulum 1
golgi 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH73230	Soybean	cytosol	95.5	95.5
KRG97663	Soybean	endoplasmic reticulum	87.89	87.89
KRH31211	Soybean	endoplasmic reticulum, nucleus, plasma membrane	87.54	87.54
PGSC0003DMT400046100	Potato	cytosol	76.47	76.47
Solyc06g050770.2.1	Tomato	plastid	75.78	75.78
AT3G56190.1	Thale cress	cytosol	75.43	75.43
Bra003231.1-P	Field mustard	cytosol	75.09	75.09
CDX67637	Canola	cytosol	75.09	75.09
CDX72160	Canola	cytosol	74.39	74.39
CDY27237	Canola	cytosol	74.39	74.39
Bra007224.1-P	Field mustard	cytosol	74.39	74.39
VIT_13s0067g02210.t01	Wine grape	extracellular	73.7	73.7
CDX76057	Canola	cytosol	74.39	73.63
PGSC0003DMT400030420	Potato	cytosol	73.36	73.36
Bra014705.1-P	Field mustard	cytosol	74.05	73.29
CDY62813	Canola	cytosol	73.01	72.26
CDY32002	Canola	cytosol	68.86	71.84
GSMUA_Achr10P...	Banana	cytosol	69.55	69.55
Solyc05g052310.2.1	Tomato	plastid	58.48	69.55
GSMUA_Achr11P...	Banana	cytosol	69.2	69.2
GSMUA_Achr5P00900_001	Banana	cytosol	66.44	66.44
Os08t0282400-01	Rice	plasma membrane	66.44	66.44
TraesCS7A01G292400.1	Wheat	golgi	64.71	64.71
KRH40815	Soybean	cytosol	64.71	64.48
EER96420	Sorghum	cytosol	14.19	63.08
TraesCS7D01G284600.1	Wheat	cytosol	64.71	62.13
TraesCS7B01G182700.2	Wheat	cytosol	64.01	61.46
PGSC0003DMT400074763	Potato	cytosol	11.42	60.0
Zm00001d033092_P001	Maize	cytosol	59.52	59.52
Zm00001d049982_P005	Maize	cytosol	66.78	55.46
PGSC0003DMT400089090	Potato	cytosol	53.98	50.81
TraesCS7B01G340300.1	Wheat	cytosol	50.87	50.17
PGSC0003DMT400043844	Potato	cytosol	32.87	45.67
AT3G56450.1	Thale cress	cytosol	48.44	36.75

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100809383	MapMan:35.1	EMBL:ACUP02008540	ncoils:Coil	EnsemblPlantsGene:GLYMA_14G054900
GO:GO:0003674	GO:GO:0005483	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005774	GO:GO:0006810	GO:GO:0006886
GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0019905	GO:GO:0031201
GO:GO:0035494	GO:GO:0061025	UniProt:I1M7N8	InterPro:IPR011990	EnsemblPlants:KRH14886	ProteinID:KRH14886
ProteinID:KRH14886.1	InterPro:NSF_attach	PFAM:PF14938	PRINTS:PR00448	PANTHER:PTHR13768	PANTHER:PTHR13768:SF8
SUPFAM:SSF48452	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000233B157	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr14:+:4378143..4381298

Molecular Weight (calculated)

32750.4 Da

IEP (calculated)

4.587

GRAVY (calculated)

-0.507

Length

289 amino acids

Sequence
(BLAST)

001: MGDHLARAED FENKAEKKLS GWGLFGSKFE DAADLFDKSA NSYKLAKSWD KAGSTYIKLA NCNLKLESKH EAAQAYVDAA HCYKKTNINE SVSCLDNAVN
101: IFCEIGRLSM AARYLKEIAE LYESEQNIEQ AVVYYEKSAD FYENEEVNTS ANQCKQKVAQ FSAQLEQYQR SIEIYEDIAR QSLSNNLLKY GVKGHLLNAG
201: ICQLCKDDVI AITNALERYQ DLDPTFSGTR EYRLLADIAA AIDEEDVGKF TEVIKEFDSM TPLDSWKTTL LLRVKEKLKA KELEEDDLT

Best Arabidopsis Sequence Match ( AT3G56190.1 )
(BLAST)

001: MGDHLVRAEE FEKKAEKKLN GWGIFGSKYE DAADLLEKAA NSYKLAKSWD QAGKAYLKLA DCHLKSDSKH DAANAYAEAA KCYKKVDTNE AASCLERAVN
101: IFCEIGRLNM AARYYKEIAE YYESDQKFEQ AIAYFEKAAE FFQNEEVTTS ANQCNLKVAQ YAAQLEQYEK AIKIYEDIAR HSLNNNLLKY GVKGHLLTAG
201: MCHLCKADVV SITNALEKYQ DLDPTFTGTR ECKFLADLAS AIDEEDIAKF TDVVKEFDSM TPLDSWKTTM LLRVKEKLKA KELEEDDLT

Arabidopsis Description

ASNAP2At3g56190 [Source:UniProtKB/TrEMBL;Acc:Q29Q46]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.