Factsheet for Solyc06g050770.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
vacuole 1
cytosol 2
endoplasmic reticulum 1
golgi 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 22908117
plastid: 26371478
extracellular: 29876421

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400046100	Potato	cytosol	98.62	98.62
Solyc05g052310.2.1	Tomato	plastid	71.28	84.77
KRG97663	Soybean	endoplasmic reticulum	79.24	79.24
KRH31211	Soybean	endoplasmic reticulum, nucleus, plasma membrane	78.89	78.89
VIT_13s0067g02210.t01	Wine grape	extracellular	77.85	77.85
KRH14886	Soybean	endoplasmic reticulum	75.78	75.78
GSMUA_Achr11P...	Banana	cytosol	74.39	74.39
GSMUA_Achr10P...	Banana	cytosol	74.39	74.39
KRH73230	Soybean	cytosol	74.05	74.05
GSMUA_Achr5P00900_001	Banana	cytosol	73.7	73.7
Bra003231.1-P	Field mustard	cytosol	73.36	73.36
CDX67637	Canola	cytosol	73.36	73.36
AT3G56190.1	Thale cress	cytosol	73.01	73.01
CDX76057	Canola	cytosol	73.7	72.95
Bra014705.1-P	Field mustard	cytosol	73.36	72.6
CDX72160	Canola	cytosol	72.32	72.32
CDY27237	Canola	cytosol	72.32	72.32
Bra007224.1-P	Field mustard	cytosol	72.32	72.32
CDY62813	Canola	cytosol	71.97	71.23
CDY32002	Canola	cytosol	66.44	69.31
Os08t0282400-01	Rice	plasma membrane	68.86	68.86
TraesCS7A01G292400.1	Wheat	golgi	68.17	68.17
TraesCS7D01G284600.1	Wheat	cytosol	68.17	65.45
TraesCS7B01G182700.2	Wheat	cytosol	67.47	64.78
Zm00001d033092_P001	Maize	cytosol	64.71	64.71
EER96420	Sorghum	cytosol	13.15	58.46
Zm00001d049982_P005	Maize	cytosol	69.55	57.76
TraesCS7B01G340300.1	Wheat	cytosol	57.44	56.66
AT3G56450.1	Thale cress	cytosol	48.79	37.01

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005483	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005774
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043
GO:GO:0019905	GO:GO:0031201	GO:GO:0035494	GO:GO:0061025	InterPro:IPR011990	InterPro:IPR013026
InterPro:IPR019734	UniProt:K4C5M1	InterPro:NSF_attach	PFAM:PF14938	PRINTS:PR00448	PFscan:PS50005
PFscan:PS50293	PANTHER:PTHR13768	PANTHER:PTHR13768:SF8	SMART:SM00028	SUPFAM:SSF48452	EnsemblPlantsGene:Solyc06g050770.2
EnsemblPlants:Solyc06g050770.2.1	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI0002766CEE	SEG:seg

Description

No Description!

Coordinates

chr6:-:33549829..33556925

Molecular Weight (calculated)

32541.3 Da

IEP (calculated)

4.794

GRAVY (calculated)

-0.442

Length

289 amino acids

Sequence
(BLAST)

001: MGDQIARGED FESKAEKKLG GWAIFGSKYE DAADLFDKAG NCFKLAKSWD KAGAVYVKLA NCHLKLDSKH EAANAYADAA HCYKKSNIKE AVSCLEQAVN
101: LFLDIGRLNM SARYYKEIAE LYEQEQNLDQ AINYYEKAAD LFQSEDVTTT ANQCKQKVAQ FSAQIEKYPR AIEIFEEIAR HSVNNNLLKY GVRGHLLNAG
201: ICQLCKGDVV AINNALERYQ ELDPTFSGTR ECKLLVDLAA AIDEEDVAKF TDAVKEYDSM TQLDAWRTTL LLRVKETLKA KELEEDDLT

Best Arabidopsis Sequence Match ( AT3G56190.1 )
(BLAST)

001: MGDHLVRAEE FEKKAEKKLN GWGIFGSKYE DAADLLEKAA NSYKLAKSWD QAGKAYLKLA DCHLKSDSKH DAANAYAEAA KCYKKVDTNE AASCLERAVN
101: IFCEIGRLNM AARYYKEIAE YYESDQKFEQ AIAYFEKAAE FFQNEEVTTS ANQCNLKVAQ YAAQLEQYEK AIKIYEDIAR HSLNNNLLKY GVKGHLLTAG
201: MCHLCKADVV SITNALEKYQ DLDPTFTGTR ECKFLADLAS AIDEEDIAKF TDVVKEFDSM TPLDSWKTTM LLRVKEKLKA KELEEDDLT

Arabidopsis Description

ASNAP2At3g56190 [Source:UniProtKB/TrEMBL;Acc:Q29Q46]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.