CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
vacuole 1
cytosol 2
endoplasmic reticulum 1
golgi 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plasma membrane: 19658398
nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 19658398 doi

S Komatsu, T Wada, Y Abaléa, MZ Nouri, Y Nanjo, N Nakayama, S Shimamura, R Yamamoto, T Nakamura, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH31211	Soybean	endoplasmic reticulum, nucleus, plasma membrane	97.58	97.58
KRH14886	Soybean	endoplasmic reticulum	87.89	87.89
KRH73230	Soybean	cytosol	85.81	85.81
Solyc06g050770.2.1	Tomato	plastid	79.24	79.24
PGSC0003DMT400046100	Potato	cytosol	79.24	79.24
VIT_13s0067g02210.t01	Wine grape	extracellular	78.2	78.2
CDX76057	Canola	cytosol	78.2	77.4
AT3G56190.1	Thale cress	cytosol	77.16	77.16
PGSC0003DMT400030420	Potato	cytosol	77.16	77.16
Bra003231.1-P	Field mustard	cytosol	76.82	76.82
CDX67637	Canola	cytosol	76.82	76.82
Bra014705.1-P	Field mustard	cytosol	77.51	76.71
CDY27237	Canola	cytosol	76.47	76.47
CDX72160	Canola	cytosol	76.47	76.47
Bra007224.1-P	Field mustard	cytosol	76.47	76.47
CDY62813	Canola	cytosol	75.78	75.0
Solyc05g052310.2.1	Tomato	plastid	62.63	74.49
GSMUA_Achr10P...	Banana	cytosol	74.05	74.05
GSMUA_Achr11P...	Banana	cytosol	73.01	73.01
CDY32002	Canola	cytosol	69.55	72.56
GSMUA_Achr5P00900_001	Banana	cytosol	71.97	71.97
Os08t0282400-01	Rice	plasma membrane	66.44	66.44
TraesCS7A01G292400.1	Wheat	golgi	66.09	66.09
KRH40815	Soybean	cytosol	64.01	63.79
TraesCS7D01G284600.1	Wheat	cytosol	66.09	63.46
TraesCS7B01G182700.2	Wheat	cytosol	65.4	62.79
Zm00001d033092_P001	Maize	cytosol	61.94	61.94
PGSC0003DMT400074763	Potato	cytosol	11.76	61.82
EER96420	Sorghum	cytosol	13.49	60.0
Zm00001d049982_P005	Maize	cytosol	66.78	55.46
PGSC0003DMT400089090	Potato	cytosol	57.44	54.07
TraesCS7B01G340300.1	Wheat	cytosol	53.29	52.56
PGSC0003DMT400043844	Potato	cytosol	37.02	51.44
AT3G56450.1	Thale cress	cytosol	50.17	38.06

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100814639	MapMan:35.1	EMBL:ACUP02010805	ProteinID:AFV36706.1	ProteinID:ARD05066.1
ncoils:Coil	EnsemblPlantsGene:GLYMA_18G022500	GO:GO:0003674	GO:GO:0005483	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005774
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043
GO:GO:0019905	GO:GO:0031201	GO:GO:0035494	GO:GO:0061025	UniProt:I1MYX8	InterPro:IPR011990
EnsemblPlants:KRG97663	ProteinID:KRG97663	ProteinID:KRG97663.1	EMBL:KX147333	InterPro:NSF_attach	PFAM:PF14938
PRINTS:PR00448	PANTHER:PTHR13768	PANTHER:PTHR13768:SF8	SUPFAM:SSF48452	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000233EF97
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:+:1641008..1645711

Molecular Weight (calculated)

32676.6 Da

IEP (calculated)

4.813

GRAVY (calculated)

-0.461

Length

289 amino acids

Sequence
(BLAST)

001: MADQLSKGEE FEKKAEKKLS GWGLFGSKYE DAADLFDKAA NCFKLAKSWD KAGATYLKLA SCHLKLESKH EAAQAHVDAA HCYKKTNINE SVSCLDRAVN
101: LFCDIGRLSM AARYLKEIAE LYEGEQNIEQ ALVYYEKSAD FFQNEEVTTS ANQCKQKVAQ FAAQLEQYQK SIDIYEEIAR QSLNNNLLKY GVKGHLLNAG
201: ICQLCKEDVV AITNALERYQ ELDPTFSGTR EYRLLADIAA AIDEEDVAKF TDVVKEFDSM TPLDSWKTTL LLRVKEKLKA KELEEDDLT

Best Arabidopsis Sequence Match ( AT3G56190.1 )
(BLAST)

001: MGDHLVRAEE FEKKAEKKLN GWGIFGSKYE DAADLLEKAA NSYKLAKSWD QAGKAYLKLA DCHLKSDSKH DAANAYAEAA KCYKKVDTNE AASCLERAVN
101: IFCEIGRLNM AARYYKEIAE YYESDQKFEQ AIAYFEKAAE FFQNEEVTTS ANQCNLKVAQ YAAQLEQYEK AIKIYEDIAR HSLNNNLLKY GVKGHLLTAG
201: MCHLCKADVV SITNALEKYQ DLDPTFTGTR ECKFLADLAS AIDEEDIAKF TDVVKEFDSM TPLDSWKTTM LLRVKEKLKA KELEEDDLT

Arabidopsis Description

ASNAP2At3g56190 [Source:UniProtKB/TrEMBL;Acc:Q29Q46]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.