CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, plasma membrane

Predictor Summary:

nucleus 1
vacuole 1
cytosol 2
endoplasmic reticulum 1
golgi 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plasma membrane: 19658398
nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 19658398 doi

S Komatsu, T Wada, Y Abaléa, MZ Nouri, Y Nanjo, N Nakayama, S Shimamura, R Yamamoto, T Nakamura, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG97663	Soybean	endoplasmic reticulum	97.58	97.58
KRH14886	Soybean	endoplasmic reticulum	87.54	87.54
KRH73230	Soybean	cytosol	85.81	85.81
Solyc06g050770.2.1	Tomato	plastid	78.89	78.89
PGSC0003DMT400046100	Potato	cytosol	78.89	78.89
VIT_13s0067g02210.t01	Wine grape	extracellular	77.51	77.51
PGSC0003DMT400030420	Potato	cytosol	76.82	76.82
CDX76057	Canola	cytosol	77.16	76.37
AT3G56190.1	Thale cress	cytosol	76.12	76.12
Bra003231.1-P	Field mustard	cytosol	75.78	75.78
CDX67637	Canola	cytosol	75.78	75.78
Bra014705.1-P	Field mustard	cytosol	76.47	75.68
CDY27237	Canola	cytosol	75.43	75.43
CDX72160	Canola	cytosol	75.43	75.43
Bra007224.1-P	Field mustard	cytosol	75.43	75.43
Solyc05g052310.2.1	Tomato	plastid	62.28	74.07
GSMUA_Achr10P...	Banana	cytosol	74.05	74.05
CDY62813	Canola	cytosol	74.74	73.97
GSMUA_Achr11P...	Banana	cytosol	72.66	72.66
CDY32002	Canola	cytosol	68.86	71.84
GSMUA_Achr5P00900_001	Banana	cytosol	71.63	71.63
Os08t0282400-01	Rice	plasma membrane	66.09	66.09
TraesCS7A01G292400.1	Wheat	golgi	65.4	65.4
KRH40815	Soybean	cytosol	63.67	63.45
TraesCS7D01G284600.1	Wheat	cytosol	65.4	62.79
TraesCS7B01G182700.2	Wheat	cytosol	64.71	62.13
PGSC0003DMT400074763	Potato	cytosol	11.76	61.82
Zm00001d033092_P001	Maize	cytosol	61.25	61.25
EER96420	Sorghum	cytosol	13.49	60.0
Zm00001d049982_P005	Maize	cytosol	67.13	55.75
PGSC0003DMT400089090	Potato	cytosol	57.44	54.07
TraesCS7B01G340300.1	Wheat	cytosol	52.94	52.22
PGSC0003DMT400043844	Potato	cytosol	37.37	51.92
AT3G56450.1	Thale cress	cytosol	49.48	37.53

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100812517	MapMan:35.1	EMBL:ACUP02007129	ncoils:Coil	EnsemblPlantsGene:GLYMA_11G234500
GO:GO:0003674	GO:GO:0005483	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005774	GO:GO:0006810	GO:GO:0006886
GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0019905	GO:GO:0031201
GO:GO:0035494	GO:GO:0061025	UniProt:I1LMW7	InterPro:IPR011990	EnsemblPlants:KRH31211	ProteinID:KRH31211
ProteinID:KRH31211.1	InterPro:NSF_attach	PFAM:PF14938	PRINTS:PR00448	PANTHER:PTHR13768	PANTHER:PTHR13768:SF8
SUPFAM:SSF48452	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000233D416	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr11:-:32967943..32972705

Molecular Weight (calculated)

32608.4 Da

IEP (calculated)

4.805

GRAVY (calculated)

-0.461

Length

289 amino acids

Sequence
(BLAST)

001: MADQLSKGEE FEKKAEKKLS GWGLFGSKYE DAADLFDKAA NCFKLAKSWD KAGATYLKLA SCHLKLESKH EAAQAHVDAA HSYKKTNINE SVSCLDQAVN
101: LFCDIGRLSM AARYLKEIAE LYEGEQNIEQ ALVYYEKSAD FFQNEEVTTS ANQCKQKVAQ FAAQLEQYQK SIEIYEEIAR QSLNNNLLKY GVKGHLLNAG
201: ICQLCKGDVI AVTNALERYQ ELDPTFSGTR EYRFLADIAA AIDEEDVAKF TDVVKEFDSM TPLDSWKTTL LLRVKEKLKA KELEEDDLT

Best Arabidopsis Sequence Match ( AT3G56190.1 )
(BLAST)

001: MGDHLVRAEE FEKKAEKKLN GWGIFGSKYE DAADLLEKAA NSYKLAKSWD QAGKAYLKLA DCHLKSDSKH DAANAYAEAA KCYKKVDTNE AASCLERAVN
101: IFCEIGRLNM AARYYKEIAE YYESDQKFEQ AIAYFEKAAE FFQNEEVTTS ANQCNLKVAQ YAAQLEQYEK AIKIYEDIAR HSLNNNLLKY GVKGHLLTAG
201: MCHLCKADVV SITNALEKYQ DLDPTFTGTR ECKFLADLAS AIDEEDIAKF TDVVKEFDSM TPLDSWKTTM LLRVKEKLKA KELEEDDLT

Arabidopsis Description

ASNAP2At3g56190 [Source:UniProtKB/TrEMBL;Acc:Q29Q46]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.