Factsheet for Solyc05g052310.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
vacuole 1
cytosol 2
endoplasmic reticulum 1
golgi 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400030420	Potato	cytosol	95.47	80.28
Solyc06g050770.2.1	Tomato	plastid	84.77	71.28
KRG97663	Soybean	endoplasmic reticulum	74.49	62.63
KRH31211	Soybean	endoplasmic reticulum, nucleus, plasma membrane	74.07	62.28
GSMUA_Achr10P...	Banana	cytosol	72.84	61.25
VIT_13s0067g02210.t01	Wine grape	extracellular	72.43	60.9
GSMUA_Achr11P...	Banana	cytosol	71.6	60.21
EER96420	Sorghum	cytosol	16.05	60.0
KRH14886	Soybean	endoplasmic reticulum	69.55	58.48
KRH73230	Soybean	cytosol	69.14	58.13
GSMUA_Achr5P00900_001	Banana	cytosol	68.72	57.79
Bra003231.1-P	Field mustard	cytosol	66.67	56.06
CDX67637	Canola	cytosol	66.67	56.06
CDX76057	Canola	cytosol	67.08	55.82
AT3G56190.1	Thale cress	cytosol	66.26	55.71
Bra014705.1-P	Field mustard	cytosol	66.67	55.48
Bra007224.1-P	Field mustard	cytosol	65.84	55.36
TraesCS7A01G292400.1	Wheat	golgi	65.84	55.36
Os08t0282400-01	Rice	plasma membrane	65.84	55.36
CDX72160	Canola	cytosol	65.84	55.36
CDY27237	Canola	cytosol	65.84	55.36
CDY62813	Canola	cytosol	66.26	55.14
PGSC0003DMT400089090	Potato	cytosol	69.14	54.72
TraesCS7D01G284600.1	Wheat	cytosol	65.84	53.16
Zm00001d033092_P001	Maize	cytosol	62.96	52.94
TraesCS7B01G182700.2	Wheat	cytosol	65.43	52.82
CDY32002	Canola	cytosol	58.44	51.26
TraesCS7B01G340300.1	Wheat	cytosol	57.61	47.78
Zm00001d049982_P005	Maize	cytosol	66.67	46.55
PGSC0003DMT400043844	Potato	cytosol	37.45	43.75
AT3G56450.1	Thale cress	cytosol	46.09	29.4

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005483	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773
GO:GO:0005774	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020
GO:GO:0016043	GO:GO:0019905	GO:GO:0031201	GO:GO:0035494	GO:GO:0061025	InterPro:IPR011990
InterPro:IPR013026	InterPro:IPR019734	UniProt:K4C1R2	InterPro:NSF_attach	PFAM:PF14938	PRINTS:PR00448
PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR13768	PANTHER:PTHR13768:SF8	SMART:SM00028	SUPFAM:SSF48452
EnsemblPlantsGene:Solyc05g052310.2	EnsemblPlants:Solyc05g052310.2.1	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI0002765D03
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5:+:62580053..62586105

Molecular Weight (calculated)

27398.6 Da

IEP (calculated)

7.377

GRAVY (calculated)

-0.412

Length

243 amino acids

Sequence
(BLAST)

001: MGDQIAKGEE FVKKAEKKLS GWGLFGSKYD DAADLFDKAA NCFKLAKSWD RAGAVYVKLA SCHLKLDSKH EAAGAYANAA HCYKKTNMRE AISCLEQAVH
101: MFLDIGRLNM SARYYKEIAE LYEQEQNLEQ AITYYEKAAD LFQSEDVTTT ANQCKQKIAE FSAKLEKYQR AIEIFEEIAQ HSIKNNLLKY GVRGHLLNAG
201: ICQLCRGDVV AINNALERYQ ELDPTFSGTR ECKLLVSRFG SCN

Best Arabidopsis Sequence Match ( AT3G56190.1 )
(BLAST)

001: MGDHLVRAEE FEKKAEKKLN GWGIFGSKYE DAADLLEKAA NSYKLAKSWD QAGKAYLKLA DCHLKSDSKH DAANAYAEAA KCYKKVDTNE AASCLERAVN
101: IFCEIGRLNM AARYYKEIAE YYESDQKFEQ AIAYFEKAAE FFQNEEVTTS ANQCNLKVAQ YAAQLEQYEK AIKIYEDIAR HSLNNNLLKY GVKGHLLTAG
201: MCHLCKADVV SITNALEKYQ DLDPTFTGTR ECKFLADLAS AIDEEDIAKF TDVVKEFDSM TPLDSWKTTM LLRVKEKLKA KELEEDDLT

Arabidopsis Description

ASNAP2At3g56190 [Source:UniProtKB/TrEMBL;Acc:Q29Q46]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.