Factsheet for PGSC0003DMT400089090

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
vacuole 1
endoplasmic reticulum 1
golgi 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400043844	Potato	cytosol	48.21	71.15
Solyc05g052310.2.1	Tomato	plastid	54.72	69.14
PGSC0003DMT400030420	Potato	cytosol	64.17	68.17
PGSC0003DMT400046100	Potato	cytosol	59.61	63.32
KRH31211	Soybean	endoplasmic reticulum, nucleus, plasma membrane	54.07	57.44
KRG97663	Soybean	endoplasmic reticulum	54.07	57.44
VIT_13s0067g02210.t01	Wine grape	extracellular	52.44	55.71
KRH14886	Soybean	endoplasmic reticulum	50.81	53.98
AT3G56190.1	Thale cress	cytosol	50.16	53.29
KRH73230	Soybean	cytosol	50.16	53.29
GSMUA_Achr11P...	Banana	cytosol	50.16	53.29
Bra003231.1-P	Field mustard	cytosol	50.16	53.29
CDX67637	Canola	cytosol	50.16	53.29
Bra014705.1-P	Field mustard	cytosol	50.49	53.08
CDX76057	Canola	cytosol	50.49	53.08
Bra007224.1-P	Field mustard	cytosol	49.84	52.94
CDY27237	Canola	cytosol	49.84	52.94
CDX72160	Canola	cytosol	49.84	52.94
CDY62813	Canola	cytosol	50.16	52.74
PGSC0003DMT400074763	Potato	cytosol	9.45	52.73
GSMUA_Achr10P...	Banana	cytosol	49.51	52.6
CDY32002	Canola	cytosol	47.23	52.35
Os08t0282400-01	Rice	plasma membrane	47.56	50.52
GSMUA_Achr5P00900_001	Banana	cytosol	47.23	50.17
Zm00001d033092_P001	Maize	cytosol	46.91	49.83
TraesCS7A01G292400.1	Wheat	golgi	45.93	48.79
TraesCS7D01G284600.1	Wheat	cytosol	45.93	46.84
TraesCS7B01G182700.2	Wheat	cytosol	45.28	46.18
TraesCS7B01G340300.1	Wheat	cytosol	41.37	43.34
Zm00001d049982_P005	Maize	cytosol	46.91	41.38
AT3G56450.1	Thale cress	cytosol	37.78	30.45

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	InterPro:IPR011990
UniProt:M1DHF1	InterPro:NSF_attach	PFAM:PF14938	EnsemblPlantsGene:PGSC0003DMG400038661	PGSC:PGSC0003DMG400038661	EnsemblPlants:PGSC0003DMT400089090
PRINTS:PR00448	PANTHER:PTHR13768	PANTHER:PTHR13768:SF8	SUPFAM:SSF48452	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002967C82

Description

Alpha-soluble NSF attachment protein [Source:PGSC_GENE;Acc:PGSC0003DMG400038661]

Coordinates

chr12:+:4106682..4108951

Molecular Weight (calculated)

34919.2 Da

IEP (calculated)

9.470

GRAVY (calculated)

-0.430

Length

307 amino acids

Sequence
(BLAST)

001: MGNQISELVK KAKKKLSETA NRMKLDKSDQ ISRGEELVKK AEKKLNGWGI FGSKYHDAAD LLYKAVDRFK LAKSWDRVGA VYVKLASCHL KLDQKHEASH
101: SYDIAADYYK MTKNLKEAIS CLEKAAHILL DIGRPNATTG HYQEIAKLYE HENDLELAIV YYQKTVDLFQ SMDLTSSANQ YRQKIAEYSA KVGKFQRSIT
201: MFEEIATYSI RNNLLKYGVR GHLLNAGICQ LCKGDVIAIS NAFERYQILD TTFSGTRECK LLMGLAAAID KRDVAEFTSC LKEYDSTIKQ DKWRTPVLLK
301: MKEALKA

Best Arabidopsis Sequence Match ( AT3G56190.1 )
(BLAST)

001: MGDHLVRAEE FEKKAEKKLN GWGIFGSKYE DAADLLEKAA NSYKLAKSWD QAGKAYLKLA DCHLKSDSKH DAANAYAEAA KCYKKVDTNE AASCLERAVN
101: IFCEIGRLNM AARYYKEIAE YYESDQKFEQ AIAYFEKAAE FFQNEEVTTS ANQCNLKVAQ YAAQLEQYEK AIKIYEDIAR HSLNNNLLKY GVKGHLLTAG
201: MCHLCKADVV SITNALEKYQ DLDPTFTGTR ECKFLADLAS AIDEEDIAKF TDVVKEFDSM TPLDSWKTTM LLRVKEKLKA KELEEDDLT

Arabidopsis Description

ASNAP2At3g56190 [Source:UniProtKB/TrEMBL;Acc:Q29Q46]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.