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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • golgi 2
  • cytosol 2
  • endoplasmic reticulum 1
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, endoplasmic reticulum, golgi, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:golgi
MultiLoc:cytosol
Plant-mPloc:endoplasmic reticulum, golgi
PProwler:mitochondrion
WoLF PSORT:mitochondrion
YLoc:cytosol
 plasma membrane: 19526560
plastid: 21433289
golgi: 25047511
plasma membrane: 27800704
plastid: 27992503
plasma membrane: 28056797
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 28056797 doi
N Yang, T Wang
Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
msms PMID: 21433289 doi
S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky
Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.
msms PMID: 25047511 doi
Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han
Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.
msms PMID: 19526560 doi
Y Cheng, Y Qi, Q Zhu, X Chen, N Wang, X Zhao, H Chen, X Cui, L Xu, W Zhang
Department of Biochemistry and Molecular Biology, College of Life Science, Nanjing Agricultural University, Nanjing, Jiangsu, PR China.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EES13745 Sorghum cytosol 92.39 92.39
TraesCS7A01G292400.1 Wheat golgi 88.24 88.24
TraesCS7D01G284600.1 Wheat cytosol 88.24 84.72
TraesCS7B01G182700.2 Wheat cytosol 87.54 84.05
Zm00001d033092_P001 Maize cytosol 80.28 80.28
Zm00001d049982_P005 Maize cytosol 92.73 77.01
GSMUA_Achr11P... Banana cytosol 74.74 74.74
OQU91434 Sorghum cytosol 74.74 74.48
GSMUA_Achr10P... Banana cytosol 73.36 73.36
GSMUA_Achr5P00900_001 Banana cytosol 71.28 71.28
TraesCS7B01G340300.1 Wheat cytosol 70.24 69.28
Solyc06g050770.2.1 Tomato plastid 68.86 68.86
PGSC0003DMT400046100 Potato cytosol 68.17 68.17
VIT_08s0058g00820.t01 Wine grape cytosol 67.82 67.82
PGSC0003DMT400030420 Potato cytosol 67.82 67.82
KRG97663 Soybean endoplasmic reticulum 66.44 66.44
KRH14886 Soybean endoplasmic reticulum 66.44 66.44
KRH31211 Soybean endoplasmic reticulum, nucleus, plasma membrane 66.09 66.09
Solyc05g052310.2.1 Tomato plastid 55.36 65.84
KRH73230 Soybean cytosol 65.4 65.4
VIT_13s0067g02210.t01 Wine grape extracellular 64.71 64.71
CDX76057 Canola cytosol 64.71 64.04
Bra014705.1-P Field mustard cytosol 64.36 63.7
AT3G56190.1 Thale cress cytosol 62.98 62.98
CDY27237 Canola cytosol 62.98 62.98
Bra007224.1-P Field mustard cytosol 62.98 62.98
CDX72160 Canola cytosol 62.98 62.98
CDX67637 Canola cytosol 62.63 62.63
Bra003231.1-P Field mustard cytosol 62.63 62.63
CDY62813 Canola cytosol 61.94 61.3
CDY32002 Canola cytosol 57.79 60.29
KRH40815 Soybean cytosol 57.44 57.24
PGSC0003DMT400074763 Potato cytosol 10.03 52.73
PGSC0003DMT400089090 Potato cytosol 50.52 47.56
PGSC0003DMT400043844 Potato cytosol 31.83 44.23
AT3G56450.1 Thale cress cytosol 39.45 29.92
Protein Annotations
Gene3D:1.25.40.10MapMan:35.1EntrezGene:4345167EMBL:AK100935ProteinID:BAC99966.1ProteinID:BAF23360.1
ProteinID:BAT04711.1ncoils:CoilProteinID:EAZ42174.1GO:GO:0003674GO:GO:0005483GO:GO:0005488
GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005773
GO:GO:0005774GO:GO:0006810GO:GO:0006886GO:GO:0008150GO:GO:0008152GO:GO:0009987
GO:GO:0016020GO:GO:0016043GO:GO:0019905GO:GO:0031201GO:GO:0035494GO:GO:0042558
GO:GO:0061025InterPro:IPR011990InterPro:IPR019734InterPro:NSF_attachEnsemblPlantsGene:Os08g0282400EnsemblPlants:Os08t0282400-01
PFAM:PF14938PRINTS:PR00448PANTHER:PTHR13768PANTHER:PTHR13768:SF8UniProt:Q6YS11SMART:SM00028
SUPFAM:SSF48452InterPro:TPR-like_helical_dom_sfInterPro:TPR_repeatUniParc:UPI00001D8E59RefSeq:XP_015650775.1SEG:seg
Description
Similar to Alpha-SNAP (Fragment). (Os08t0282400-01)
Coordinates
chr8:+:11102726..11108224
Molecular Weight (calculated)
32487.0 Da
IEP (calculated)
4.795
GRAVY (calculated)
-0.616
Length
289 amino acids
Sequence
(BLAST)
001: MGDHEARGDD FEKKAEKKLS GWGIFGSKYE DAADLFDKGA NSFKLAKNWS RAAQVYIKIA NCHLKGDSKH EAASAYVEAA NCYKKFSPQE AAQALNQAVD
101: LFLEIGRLNM AARYCKDIGE IYHQEQDLEK ASDYLEKSAD LFDSEGQSSQ SNSIKQKVAE IAAQLEQYQK ANEIFEAIAR QQINNNLLKY SVRGILLNAG
201: ICQLCRGDVV AITNSMERYQ DIDPTFSGTR EYKLLSDLAA AMEEGDVAKF TDAIKEFDSM TRLDPWKTTL LLRAKNELKK KEDDEDDLT
Best Arabidopsis Sequence Match ( AT3G56190.1 )
(BLAST)
001: MGDHLVRAEE FEKKAEKKLN GWGIFGSKYE DAADLLEKAA NSYKLAKSWD QAGKAYLKLA DCHLKSDSKH DAANAYAEAA KCYKKVDTNE AASCLERAVN
101: IFCEIGRLNM AARYYKEIAE YYESDQKFEQ AIAYFEKAAE FFQNEEVTTS ANQCNLKVAQ YAAQLEQYEK AIKIYEDIAR HSLNNNLLKY GVKGHLLTAG
201: MCHLCKADVV SITNALEKYQ DLDPTFTGTR ECKFLADLAS AIDEEDIAKF TDVVKEFDSM TPLDSWKTTM LLRVKEKLKA KELEEDDLT
Arabidopsis Description
ASNAP2At3g56190 [Source:UniProtKB/TrEMBL;Acc:Q29Q46]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.