CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033092_P001	Maize	cytosol	85.17	85.47
EES13745	Sorghum	cytosol	77.93	78.2
TraesCS7A01G292400.1	Wheat	golgi	75.17	75.43
Os08t0282400-01	Rice	plasma membrane	74.48	74.74
TraesCS7D01G284600.1	Wheat	cytosol	75.17	72.43
TraesCS7B01G182700.2	Wheat	cytosol	74.48	71.76
GSMUA_Achr11P...	Banana	cytosol	64.48	64.71
GSMUA_Achr5P00900_001	Banana	cytosol	62.07	62.28
GSMUA_Achr10P...	Banana	cytosol	61.38	61.59
TraesCS7B01G340300.1	Wheat	cytosol	61.03	60.41
EER96420	Sorghum	cytosol	13.1	58.46

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:8064551	UniProt:A0A1Z5S671	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006810
GO:GO:0006886	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	InterPro:IPR011990	InterPro:IPR013026
InterPro:NSF_attach	EnsemblPlants:OQU91434	ProteinID:OQU91434	ProteinID:OQU91434.1	ProteinID:OQU91435.1	ProteinID:OQU91437.1
PFAM:PF14938	PRINTS:PR00448	PFscan:PS50293	PANTHER:PTHR13768	PANTHER:PTHR13768:SF8	EnsemblPlantsGene:SORBI_3001G179800
SUPFAM:SSF48452	unigene:Sbi.20746	TMHMM:TMhelix	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000B423928

Description

hypothetical protein

Coordinates

chr1:-:15235511..15240137

Molecular Weight (calculated)

32431.9 Da

IEP (calculated)

4.867

GRAVY (calculated)

-0.438

Length

290 amino acids

Sequence
(BLAST)

001: MGDHEGRGDD FEKKADQKLS GWGLFGNKYE EAADLLDRAG NFFKLAKNWS RAASVYKKIA DCHLQGDSKH EAASAYVEAA NCYKKFSPQD AAQALNNAVN
101: LFLEIGRLNM AARYSKDIGD IYQQEQDLEN AAVYLNRAAD LFDSEGQSSQ ANSMTQKIAE IYAQLEKYQK ATELFEEIAR KSINNNLLKY GVRGILLNAG
201: LCQLCRGDTV AINNSLERYQ DIDPTFSGTR EYKLLADLAA SMDEGDVDKF TDAVKEFDSM TRLVQSIGNF SVFSFIIWAG ASSRVVYYLR

Best Arabidopsis Sequence Match ( AT3G56450.1 )
(BLAST)

001: MFFVKGEGFF YPLFIELRNL IRYQTTRVSN SSRDFNLSQQ HCSCFRPKRR HEAHLSFIGT LQYSKQRTIT RAASATIARR QLLLLFDITF SSSSSCYYFQ
101: KKAEKKLNRR RRFDTKYEDA ADLLEKARDS YKLAKSWDQA GIAYLKLADC HLKANSLANT YMIMDECMDH EIAEYYESDE MFEQAIAYYE TAAEFFQIEE
201: VTTSANQCNL KVAQYASQLE QQSRFMKTQA RHSLNNKLLK YGVKGHLLTA GMCHLCKADV VSITNALEKY QDLDPTFSGT RECKFLADLA SAIDEEDIAK
301: FTDVSKEIDS VSPLVWAVNH MQLFGCKLCL VLDHDNNVVE GKREVQGQGA GGGCKLYLIE GKCILDWNNV YTKRIYNYTN F

Arabidopsis Description

ASNAP1Alpha-soluble NSF attachment protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXZ5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.