Factsheet for PGSC0003DMT400030420

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 1
cytosol 2
endoplasmic reticulum 1
golgi 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g052310.2.1	Tomato	plastid	80.28	95.47
PGSC0003DMT400046100	Potato	cytosol	87.89	87.89
KRG97663	Soybean	endoplasmic reticulum	77.16	77.16
KRH31211	Soybean	endoplasmic reticulum, nucleus, plasma membrane	76.82	76.82
VIT_13s0067g02210.t01	Wine grape	extracellular	75.43	75.43
KRH14886	Soybean	endoplasmic reticulum	73.36	73.36
GSMUA_Achr10P...	Banana	cytosol	73.01	73.01
KRH73230	Soybean	cytosol	72.32	72.32
GSMUA_Achr11P...	Banana	cytosol	71.97	71.97
Bra003231.1-P	Field mustard	cytosol	70.24	70.24
CDX67637	Canola	cytosol	70.24	70.24
GSMUA_Achr5P00900_001	Banana	cytosol	70.24	70.24
CDX76057	Canola	cytosol	70.93	70.21
AT3G56190.1	Thale cress	cytosol	69.9	69.9
Bra014705.1-P	Field mustard	cytosol	70.59	69.86
CDY27237	Canola	cytosol	69.55	69.55
CDX72160	Canola	cytosol	69.55	69.55
Bra007224.1-P	Field mustard	cytosol	69.55	69.55
CDY62813	Canola	cytosol	68.86	68.15
Os08t0282400-01	Rice	plasma membrane	67.82	67.82
CDY32002	Canola	cytosol	64.01	66.79
TraesCS7A01G292400.1	Wheat	golgi	66.44	66.44
PGSC0003DMT400089090	Potato	cytosol	68.17	64.17
Zm00001d033092_P001	Maize	cytosol	64.01	64.01
TraesCS7D01G284600.1	Wheat	cytosol	66.44	63.79
TraesCS7B01G182700.2	Wheat	cytosol	65.74	63.12
PGSC0003DMT400043844	Potato	cytosol	43.94	61.06
PGSC0003DMT400074763	Potato	cytosol	11.42	60.0
TraesCS7B01G340300.1	Wheat	cytosol	57.79	57.0
Zm00001d049982_P005	Maize	cytosol	68.17	56.61
AT3G56450.1	Thale cress	cytosol	46.02	34.91

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	Gene3D:1.25.40.10	EntrezGene:102581624	MapMan:35.1	ncoils:Coil	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006108	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016615	GO:GO:0055114	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	UniProt:M1AU81
InterPro:Malate_DH_AS	InterPro:NSF_attach	PFAM:PF14938	EnsemblPlantsGene:PGSC0003DMG400011650	PGSC:PGSC0003DMG400011650	EnsemblPlants:PGSC0003DMT400030420
PRINTS:PR00448	ScanProsite:PS00068	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR13768	PANTHER:PTHR13768:SF8
SMART:SM00028	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI000295E001
RefSeq:XP_006365324.1	SEG:seg	:	:	:	:

Description

Alpha-soluble NSF attachment protein [Source:PGSC_GENE;Acc:PGSC0003DMG400011650]

Coordinates

chr5:+:47567094..47573430

Molecular Weight (calculated)

32731.9 Da

IEP (calculated)

5.317

GRAVY (calculated)

-0.431

Length

289 amino acids

Sequence
(BLAST)

001: MGDQIARGEE FMKKAEKKLS GWGLFGSKYD DAADLFDKAA NCFKLAKSWD RAGAVYVKLA SCHLKLDSKH EAAGAYANAA HCYKKTNIRE AISCLEQAVH
101: MFLDIGRLNM SARYYKEIAE LYEQEQNLGQ AITYYEKAAD LFQSEDVTTT ANQCKQKIAE FSAKLEKYQR AIEIFEEIAQ HSIKNNLLKY GVRGHLLNAG
201: ICQLCRGDVV AINNALERYQ ELDPTFSGTR ECKLLVDLEA AIDEEDVAKF TGCLKEYDSM TKLDEWRTTL LLRVKEALKA KELEEDDLT

Best Arabidopsis Sequence Match ( AT3G56190.1 )
(BLAST)

001: MGDHLVRAEE FEKKAEKKLN GWGIFGSKYE DAADLLEKAA NSYKLAKSWD QAGKAYLKLA DCHLKSDSKH DAANAYAEAA KCYKKVDTNE AASCLERAVN
101: IFCEIGRLNM AARYYKEIAE YYESDQKFEQ AIAYFEKAAE FFQNEEVTTS ANQCNLKVAQ YAAQLEQYEK AIKIYEDIAR HSLNNNLLKY GVKGHLLTAG
201: MCHLCKADVV SITNALEKYQ DLDPTFTGTR ECKFLADLAS AIDEEDIAKF TDVVKEFDSM TPLDSWKTTM LLRVKEKLKA KELEEDDLT

Arabidopsis Description

ASNAP2At3g56190 [Source:UniProtKB/TrEMBL;Acc:Q29Q46]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.