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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • nucleus 1
  • extracellular 4
  • endoplasmic reticulum 5
  • vacuole 4
  • plasma membrane 4
  • golgi 4
  • plastid 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, nucleus, secretory
BaCelLo:nucleus
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX76839
CDX81765
CDY04768
CDY21400
CDY25761
CDY34799
CDY51001
CDY55881
CDY68470

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G22360.1 CDX81765 AT1G16500.1 21798944
AT5G22360.1 CDY51001 AT1G16500.1 21798944
AT5G22360.1 CDY55881 AT1G16500.1 21798944
AT5G22360.1 CDY68470 AT1G16500.1 21798944
AT5G22360.1 CDY04768 AT1G22920.1 21798944
AT5G22360.1 CDY21400 AT1G22920.1 21798944
AT5G22360.1 CDY25761 AT1G22920.1 21798944
AT5G22360.1 CDX76839 AT2G24100.1 21798944
AT5G22360.1 CDY34799 AT2G24100.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX88799 Canola plasma membrane 97.74 97.74
CDY09133 Canola endoplasmic reticulum 95.02 95.02
AT5G22360.1 Thale cress plasma membrane 93.67 93.67
VIT_06s0080g00800.t01 Wine grape endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 86.43 86.82
KRH25265 Soybean plasma membrane 84.16 84.55
KRH30399 Soybean endoplasmic reticulum 83.71 84.09
Zm00001d052756_P001 Maize endoplasmic reticulum 72.85 83.42
GSMUA_Achr10P... Banana endoplasmic reticulum, plasma membrane, plastid 81.0 82.11
EES13179 Sorghum endoplasmic reticulum, plasma membrane 82.35 81.98
GSMUA_Achr11P... Banana endoplasmic reticulum 80.54 81.65
TraesCS7A01G328000.1 Wheat plasma membrane 80.54 80.18
TraesCS7B01G228700.1 Wheat plasma membrane 80.54 80.18
TraesCS7D01G324800.1 Wheat plasma membrane 80.54 80.18
HORVU7Hr1G078500.1 Barley plasma membrane 80.09 79.73
Os10t0154000-01 Rice plasma membrane 80.54 78.76
PGSC0003DMT400015063 Potato plastid 76.02 73.68
Solyc06g074250.2.1 Tomato endoplasmic reticulum, plasma membrane 84.62 71.65
CDY61387 Canola endoplasmic reticulum, plasma membrane 54.75 55.25
CDX75224 Canola endoplasmic reticulum, plasma membrane 54.75 55.0
CDX68821 Canola endoplasmic reticulum, plasma membrane 54.75 55.0
CDX69781 Canola plasma membrane 52.94 52.94
CDX97084 Canola plasma membrane 52.04 52.04
CDY15521 Canola endoplasmic reticulum 40.27 40.64
CDX86608 Canola endoplasmic reticulum 39.82 40.18
CDY06150 Canola cytosol 39.82 40.0
CDY10053 Canola endoplasmic reticulum 39.37 39.55
CDX84702 Canola endoplasmic reticulum 39.37 39.19
CDY19450 Canola cytosol, extracellular 38.91 38.56
CDY17139 Canola cytosol, extracellular 38.91 38.56
CDX79510 Canola endoplasmic reticulum 38.46 38.29
CDX89793 Canola endoplasmic reticulum 38.01 38.18
CDY18254 Canola endoplasmic reticulum 38.01 38.18
CDY19154 Canola cytosol 37.56 37.73
CDX84731 Canola cytosol 37.56 37.73
CDY12188 Canola cytosol 37.56 37.73
CDX79466 Canola endoplasmic reticulum 29.86 37.5
CDY37751 Canola endoplasmic reticulum, extracellular, plasma membrane 36.65 36.99
CDY48531 Canola cytosol 35.75 35.91
CDY19156 Canola cytosol 23.08 35.42
CDY23768 Canola endoplasmic reticulum, extracellular, plasma membrane 26.7 35.33
CDY48527 Canola cytosol 11.31 34.72
CDY59643 Canola extracellular 11.31 33.78
CDY44179 Canola cytosol 33.94 33.78
CDY22900 Canola cytosol, plasma membrane, plastid 33.48 33.33
CDY59642 Canola endoplasmic reticulum 26.7 33.15
CDX79465 Canola extracellular 12.67 32.56
CDX76153 Canola cytosol 34.84 31.82
CDY07551 Canola cytosol 34.39 31.67
CDX73490 Canola plasma membrane 33.94 31.12
CDX67594 Canola cytosol 33.94 31.12
CDX78228 Canola cytosol, plasma membrane 33.03 30.42
CDY13199 Canola plasma membrane 27.15 30.15
CDY23767 Canola extracellular 13.12 27.1
CDY22757 Canola cytosol 23.98 26.24
Protein Annotations
Gene3D:1.20.5.110MapMan:22.7.5.1Gene3D:3.30.450.50GO:A0A078C4A3EnsemblPlants:CDX70999ProteinID:CDX70999
ProteinID:CDX70999.1GO:GO:0005575GO:GO:0006810GO:GO:0008150GO:GO:0016020GO:GO:0016021
GO:GO:0016192EnsemblPlantsGene:GSBRNA2T00140931001InterPro:IPR001388InterPro:IPR010908InterPro:Longin-like_dom_sfInterPro:Longin_dom
PFAM:PF00957PFAM:PF13774PRINTS:PR00219ScanProsite:PS00417PFscan:PS50859PFscan:PS50892
PANTHER:PTHR21136PANTHER:PTHR21136:SF165SMART:SM01270SUPFAM:SSF58038SUPFAM:SSF64356InterPro:Synaptobrevin
TMHMM:TMhelixUniParc:UPI0004EBAEF0SEG:seg:::
Description
BnaC03g10830D
Coordinates
chrLK031791:-:3117799..3119283
Molecular Weight (calculated)
25196.8 Da
IEP (calculated)
8.983
GRAVY (calculated)
0.078
Length
221 amino acids
Sequence
(BLAST)
001: MAIIYAVVAR GTVVLAEFSA VTGNTGAVVR RILEKLSPET ADERLCFSQD GYIFHILRSD GLTFLCMAND TFGRRIPFSY LEDVHMRFMK NYGRVAHHAP
101: AYAMNDEFSR VLHQQMEFFS SNPSVDTLNR VRGEVSEIRS VMVENIEKIM ERGDRIELLV DKTATMQDNS FHFRKQSKRL RRALWMKNAK LLVVLTCLIV
201: LVLYIIIASF CGGITLSSCR S
Best Arabidopsis Sequence Match ( AT5G22360.1 )
(BLAST)
001: MAIVYAVVAR GTVVLAEFSA VTGNTGAVVR RILEKLSPEI SDERLCFSQD RYIFHILRSD GLTFLCMAND TFGRRVPFSY LEEIHMRFMK NYGKVAHNAP
101: AYAMNDEFSR VLHQQMEFFS SNPSVDTLNR VRGEVSEIRS VMVENIEKIM ERGDRIELLV DKTATMQDSS FHFRKQSKRL RRALWMKNAK LLVLLTCLIV
201: FLLYIIIASF CGGITLPSCR S
Arabidopsis Description
VAMP714Vesicle-associated membrane protein 714 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMR5]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.