CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73008
CDY60136

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24100.1	CDX73008	AT1G73720.1	21798944
AT2G24100.1	CDY60136	AT1G73720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039229.1-P	Field mustard	nucleus	99.07	99.07
CDX76839	Canola	nucleus	93.01	93.22
AT2G24100.1	Thale cress	nucleus	72.49	66.74
HORVU0Hr1G040420.1	Barley	cytosol	21.91	54.97
CDY23256	Canola	nucleus	60.84	48.42
CDX68693	Canola	cytosol	62.24	48.11
CDY39241	Canola	cytosol	62.94	47.62
CDY28214	Canola	cytosol	62.94	47.2
CDY36470	Canola	nucleus	60.37	46.75
CDX72268	Canola	nucleus	61.31	46.47
CDY28207	Canola	cytosol	18.18	45.88
KRH54987	Soybean	nucleus	56.88	45.78
VIT_11s0037g00810.t01	Wine grape	cytosol	58.74	45.57
KRH63129	Soybean	nucleus	55.71	44.84
Os02t0793800-00	Rice	cytosol	29.6	43.79
GSMUA_Achr9P22760_001	Banana	nucleus	53.15	42.86
Solyc07g005990.2.1	Tomato	cytosol	52.68	42.4
PGSC0003DMT400029158	Potato	cytosol	52.21	42.03
KRH03001	Soybean	cytosol	47.79	41.58
GSMUA_Achr4P05930_001	Banana	cytosol	50.35	40.37
GSMUA_Achr5P04640_001	Banana	nucleus	47.79	39.65
HORVU3Hr1G034290.1	Barley	cytosol	43.59	39.45
Os06t0186600-02	Rice	cytosol	35.66	39.23
KRH72344	Soybean	cytosol	47.32	37.94
GSMUA_Achr4P12730_001	Banana	mitochondrion	51.52	37.91
KXG31260	Sorghum	cytosol	43.82	37.68
HORVU7Hr1G031130.2	Barley	nucleus	46.39	37.62
KXG19496	Sorghum	nucleus	46.85	37.5
Zm00001d037085_P005	Maize	nucleus	46.62	37.11
Zm00001d045084_P002	Maize	cytosol	46.39	36.99
TraesCS7D01G153200.1	Wheat	nucleus	45.45	36.59
TraesCS7A01G151300.1	Wheat	nucleus	45.45	36.59
TraesCS7B01G055300.1	Wheat	cytosol	44.99	36.42
Zm00001d052047_P001	Maize	nucleus	41.26	36.27
GSMUA_Achr4P11470_001	Banana	plasma membrane	47.09	35.82
KRH58482	Soybean	mitochondrion	32.4	34.84
CDY22822	Canola	nucleus	19.11	33.33
TraesCS6B01G387700.1	Wheat	mitochondrion	37.3	33.2
TraesCS6A01G354900.1	Wheat	mitochondrion	36.83	32.71
CDY25203	Canola	cytosol	17.95	31.95
TraesCS6D01G337100.2	Wheat	mitochondrion	36.13	30.75
CDY14664	Canola	cytosol	22.14	23.4
CDY05199	Canola	nucleus	19.81	21.2
CDX74132	Canola	cytosol	19.58	20.95
CDY27740	Canola	plastid	19.58	16.47

Protein Annotations

EnsemblPlants:CDY34799	EnsemblPlantsGene:GSBRNA2T00057346001	PANTHER:PTHR33494	PANTHER:PTHR33494:SF1	ProteinID:CDY34799	ProteinID:CDY34799.1
SEG:seg	UniParc:UPI0004EDFD4D	UniProt:A0A078HBC5	MapMan:35.2	:	:

Description

BnaA09g41660DBnaA09g41660D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HBC5]

Coordinates

chrLK032341:-:333243..335617

Molecular Weight (calculated)

48177.8 Da

IEP (calculated)

5.485

GRAVY (calculated)

-0.541

Length

429 amino acids

Sequence
(BLAST)

001: MKSRNLRPAS KLPVKLEIVE DFLEEENGPA NKRSKLWSNG TSVSLIPPNL LDEPSPLGLS LRKSPSLQDL IQMRLSQSVK KETIANASSL VGTVEKLKAS
101: NFPATVLRIG QWEYKSRYEG DLVAKCYFAK HKLVWEVLEQ GLKSKIEIQW SDIMALKASC PEDEPGTLTI VLARRPLFYR ETNPQPRKHT LWQATSDFTD
201: GQASMNRQHF LQCLPGILNK HIEKLLQCDH RLFCLSQEPE MNFDTLFSDT RQSIFEDPSV SGAQSSSEHM SLSHDALSPS SVMDARAIEG GVGARNWNQI
301: HQSISMNDFL AFLSDQANCE NNPEFEDMKQ LLLSDTQTET SDEKSVMSKV NSFYNLLETA ANDGKEIGLD NNNNSNKRHN KTEEGSIVLD HASSSMSRKD
401: SFTDLLAHLP RITSLPKFLF NISEEDGDA

Best Arabidopsis Sequence Match ( AT2G24100.1 )
(BLAST)

001: MVEMMRSENH LRQASKHRNN NFPVKLEIIE DSLEEEHAPL NKRSKLWSNG TSVSKFSLLE EPSPLGLSLK KSPSFQELIE MKLSQSGDDS NSVKKESFGF
101: GGVGTVEKLK ASNFPATILR IGQWEYKSRY EGDLVAKCYF AKHKLVWEVL EQGLKSKIEI QWSDIMALKA NLPEDEPGTL TIVLARRPLF FRETNPQPRK
201: HTLWQATSDF TDGQASMNRQ HFLQCPPGIM NKHFEKLVQC DHRLFCLSRQ PEINLAAPFF DSRLSIFEDP SVSGSHNIAS PVGAQSSSEH VSLSHDALSP
301: SSVMDARAIE GVGGSIDSRN TNGWSQIKMP GLHQSISMND FLTFLSDQAC ENNQEFEEMK QLLLSDNTQT DPSDEKSVMS KVNSFCNLLQ SAANSQLNIE
401: TADTERVVGV DNNRHMPEGG KRVVDPASSS KPLQGMSRKD SFSDLLVHLP RITSLPKFLF NISEED

Arabidopsis Description

ATP-dependent DNA helicase [Source:UniProtKB/TrEMBL;Acc:Q9ZUI1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.