Factsheet for GSMUA_Achr9P22760_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr6P25450_001
GSMUA_Achr9P08610_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24100.1	GSMUA_Achr6P25450_001	AT1G73720.1	21798944
AT2G24100.1	GSMUA_Achr9P08610_001	AT1G73720.1	21798944
AT4G30780.1	GSMUA_Achr10P...	AT5G22360.1	21798944
AT4G30780.1	GSMUA_Achr11P...	AT5G22360.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P05930_001	Banana	cytosol	66.92	66.54
GSMUA_Achr4P12730_001	Banana	mitochondrion	64.85	59.18
VIT_11s0037g00810.t01	Wine grape	cytosol	56.2	54.07
Bra039229.1-P	Field mustard	nucleus	43.23	53.61
CDX76839	Canola	nucleus	43.05	53.5
CDY34799	Canola	nucleus	42.86	53.15
GSMUA_Achr5P04640_001	Banana	nucleus	50.38	51.84
GSMUA_Achr4P11470_001	Banana	plasma membrane	54.7	51.6
KRH63129	Soybean	nucleus	50.56	50.47
AT2G24100.1	Thale cress	nucleus	44.17	50.43
KRH54987	Soybean	nucleus	50.38	50.28
Solyc03g117680.2.1	Tomato	cytosol	48.31	48.13
PGSC0003DMT400036859	Potato	cytosol	46.62	47.97
Solyc07g005990.2.1	Tomato	cytosol	47.56	47.47
KRH03001	Soybean	cytosol	43.42	46.86
PGSC0003DMT400029158	Potato	cytosol	46.8	46.72
KRH72344	Soybean	cytosol	46.43	46.17
VIT_09s0018g01680.t01	Wine grape	cytosol	45.68	45.76
PGSC0003DMT400074432	Potato	nucleus	42.48	44.58
Solyc06g068540.2.1	Tomato	cytosol	42.48	42.88
KRH58482	Soybean	mitochondrion	31.95	42.61
Bra024044.1-P	Field mustard	nucleus	44.55	41.73
CDY39241	Canola	cytosol	44.17	41.45
CDX68693	Canola	cytosol	43.23	41.44
CDY23256	Canola	nucleus	41.54	41.0
CDY36470	Canola	nucleus	42.29	40.61
Bra011214.1-P	Field mustard	cytosol	12.97	40.59
CDY28207	Canola	cytosol	12.97	40.59
CDX72268	Canola	nucleus	42.86	40.28
CDY28214	Canola	cytosol	43.23	40.21
Bra011221.1-P	Field mustard	nucleus	42.86	40.07
KRH44588	Soybean	cytosol	45.49	40.07
Bra010274.1-P	Field mustard	cytosol	41.73	39.93
AT4G30780.1	Thale cress	nucleus	43.61	39.39
KRH47309	Soybean	nucleus	43.98	39.07
KRH28821	Soybean	peroxisome	27.63	34.43
GSMUA_Achr11P...	Banana	cytosol	14.85	23.37

Protein Annotations

EnsemblPlants:GSMUA_Achr9P22760_001	EnsemblPlants:GSMUA_Achr9T22760_001	EnsemblPlantsGene:GSMUA_Achr9G22760_001	PANTHER:PTHR33494	PANTHER:PTHR33494:SF1	SEG:seg
UniParc:UPI0002969EAD	UniProt:M0U2N5	MapMan:35.2	:	:	:

Description

expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr9G22760_001]

Coordinates

chr9:-:27839109..27844181

Molecular Weight (calculated)

58832.4 Da

IEP (calculated)

4.865

GRAVY (calculated)

-0.500

Length

532 amino acids

Sequence
(BLAST)

001: MVQLTNHGKL RPESELPMKM SLPLATKLEI EDPLEDEHGP LNKRSKQCGT GESMPLTEVI QNNLLNEPSP LGLRLRKSPS LVDLIQMRLS QANAAANSCI
101: LNDENLENEK KNDTRSTIAL ANTEKLKASN FPASLLRIGT WEYVSRYEGD LVAKCYFAKR KLVWEILEGG LKSKIEIQWS DITALKATCP EDAPGTLDIV
201: LGGQPLFFRE TNPQPRKHTL WQATSDFTDG QASIHRRHLL RCPQGLLSKH FEKLIQCDPR LCALSHEPDV FLDAPFSEPR CSVFEDHDES KCHPFDKLND
301: PYGSVVQEYE DSALTCASTS TSAKNDIRDP IDTGKIHSPS PVMGPWVTQG SGTAETEDSN NQWCWDQLKV PGLKHSMSIS DFVNQIGHRI SEQISLGNPQ
401: LSGSVIPDKE MLEELAQCLF SDSQMSTSDE KSVMSKVNSF CCLLQKDVGT VDSQQTDGGG PAANENGFCN NISEKHTSIT KGEINDVPGP KAVASMSRKD
501: SFSDLLMQLP RIASLPQFLF NIAEDEDSSL SS

Best Arabidopsis Sequence Match ( AT4G30780.1 )
(BLAST)

001: MVEMRKSGGL RPESESAARC RDELPVKLEI AEDDLEEEHG PLNKRSRLWS PGTSSSTMAP AKYNPLDEPS PLGLSLKKSP SLLELIQMKI THCGDPKAAE
101: TLKAGALGSG LKRESKTIAA AASVGPTLAP GSIEKLKASN FPASLLKIGQ WEYKSRYEGD LVAKCYFAKH KLVWEVLEQG LKSKIEIQWS DIMALKANCP
201: EDGPGTLTLV LARQPLFFRE TNPQPRKHTL WQATSDFTDG QASMNRQHFL QCAQGIMNKH FEKLVQCDHR LFHLSRQPEI AIDSPYFDAR QSIFEDPSES
301: KGHPFGNLNL STGPSISGTQ NLASPVGAQS SSEHMYLSHE APSPSSVIDA RANEGIGGSE AVNSRNRTDC GQIEAPGIHQ SMSLSDFLAV LCDTKNTTDL
401: NLADDVDGLH QSMSVSDFVA YLSDSRNITD SDQIKVPGLH QSMSVSDFVG LLSDSAGGSH PEHMEKFEIM KQQLLSDNIQ FEAPDEKSLM PRVNSLFNLL
501: YKDPNVAANS QLNTEMSVGL KSEPKGIVSD NNNNNNNNNR VLDTASSSKP QGMLRKDSFS DLLLHLPRIT SLPKFLSNIS EEDGDAYNR

Arabidopsis Description

ATP-dependent DNA helicase [Source:UniProtKB/TrEMBL;Acc:Q9SUG8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.