Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G30780.1 | CDX70999 | AT5G22360.1 | 21798944 |
| AT4G30780.1 | CDX88799 | AT5G22360.1 | 21798944 |
| AT4G30780.1 | CDY09133 | AT5G22360.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024044.1-P | Field mustard | nucleus | 98.24 | 98.06 |
| CDX72268 | Canola | nucleus | 90.12 | 90.28 |
| CDY28214 | Canola | cytosol | 83.42 | 82.69 |
| CDX68693 | Canola | cytosol | 79.37 | 81.08 |
| CDY23256 | Canola | nucleus | 76.37 | 80.33 |
| CDY36470 | Canola | nucleus | 78.48 | 80.32 |
| AT4G30780.1 | Thale cress | nucleus | 79.54 | 76.57 |
| CDY28207 | Canola | cytosol | 19.93 | 66.47 |
| CDY34799 | Canola | nucleus | 47.62 | 62.94 |
| CDX76839 | Canola | nucleus | 46.21 | 61.22 |
| HORVU0Hr1G040420.1 | Barley | cytosol | 17.46 | 57.89 |
| KRH63129 | Soybean | nucleus | 47.97 | 51.03 |
| KRH54987 | Soybean | nucleus | 46.91 | 49.91 |
| VIT_11s0037g00810.t01 | Wine grape | cytosol | 47.8 | 49.01 |
| KRH03001 | Soybean | cytosol | 40.92 | 47.06 |
| Solyc07g005990.2.1 | Tomato | cytosol | 43.56 | 46.34 |
| PGSC0003DMT400029158 | Potato | cytosol | 43.39 | 46.15 |
| KRH72344 | Soybean | cytosol | 43.03 | 45.61 |
| Os02t0793800-00 | Rice | cytosol | 23.1 | 45.17 |
| Os06t0186600-02 | Rice | cytosol | 31.04 | 45.13 |
| HORVU3Hr1G034290.1 | Barley | cytosol | 37.57 | 44.94 |
| GSMUA_Achr9P22760_001 | Banana | nucleus | 41.45 | 44.17 |
| Zm00001d037085_P005 | Maize | nucleus | 41.09 | 43.23 |
| KXG19496 | Sorghum | nucleus | 40.74 | 43.1 |
| Zm00001d045084_P002 | Maize | cytosol | 40.74 | 42.94 |
| GSMUA_Achr4P05930_001 | Banana | cytosol | 40.39 | 42.8 |
| HORVU7Hr1G031130.2 | Barley | nucleus | 39.86 | 42.72 |
| GSMUA_Achr5P04640_001 | Banana | nucleus | 38.8 | 42.55 |
| TraesCS7B01G055300.1 | Wheat | cytosol | 39.68 | 42.45 |
| TraesCS7A01G151300.1 | Wheat | nucleus | 39.68 | 42.21 |
| TraesCS7D01G153200.1 | Wheat | nucleus | 39.33 | 41.84 |
| KXG31260 | Sorghum | cytosol | 36.16 | 41.08 |
| GSMUA_Achr4P12730_001 | Banana | mitochondrion | 41.62 | 40.48 |
| KRH58482 | Soybean | mitochondrion | 28.04 | 39.85 |
| Zm00001d052047_P001 | Maize | nucleus | 34.04 | 39.55 |
| GSMUA_Achr4P11470_001 | Banana | plasma membrane | 37.74 | 37.94 |
| CDY22822 | Canola | nucleus | 15.34 | 35.37 |
| TraesCS6B01G387700.1 | Wheat | mitochondrion | 29.28 | 34.44 |
| CDY25203 | Canola | cytosol | 14.46 | 34.02 |
| TraesCS6A01G354900.1 | Wheat | mitochondrion | 28.75 | 33.75 |
| TraesCS6D01G337100.2 | Wheat | mitochondrion | 28.22 | 31.75 |
| CDY14664 | Canola | cytosol | 17.11 | 23.89 |
| CDX74132 | Canola | cytosol | 16.05 | 22.69 |
| CDY05199 | Canola | nucleus | 15.7 | 22.19 |
| CDY27740 | Canola | plastid | 15.52 | 17.25 |
Protein Annotations
| EnsemblPlants:CDY39241 | EnsemblPlantsGene:GSBRNA2T00067465001 | PANTHER:PTHR33494 | PANTHER:PTHR33494:SF1 | ProteinID:CDY39241 | ProteinID:CDY39241.1 |
| SEG:seg | UniParc:UPI0004EECDC7 | UniProt:A0A078HNS2 | MapMan:35.2 | : | : |
Description
BnaA03g50530DBnaA03g50530D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HNS2]
Coordinates
chrLK032443:+:295848..298311
Molecular Weight (calculated)
62401.5 Da
IEP (calculated)
5.645
GRAVY (calculated)
-0.468
Length
567 amino acids
Sequence
(BLAST)
(BLAST)
001: MVEMRRSESE LSAKRRAEFP VKLEIVEDDL EEEHAPLNKR SRLWSSGTSS SPMVPAKYNP LDEPSPLGLS LRKSPSLLDL IQMRLTQSGD SKAETMQTAG
101: VKKESKCIAA ASAGAALAPG SIEKLKASNF PASVLKIGKW EYKSRYEGDL VAKCYFAKHK LVWEVLEQGL KSKIEIQWSD IVGLKANCPE DGPGTLTLVL
201: SRQPLFFRET NPQPRKHTLW QATSDFTDGQ ASLYRKHFLQ CAQGIMNKHF EKLVQCDHRL FHLSREPEII MDFPYFDARQ SIFEDPSESK GYPYGNLNLG
301: TGPSIASPVG AQSSSEHMYL SHEAPSPSSV IDARANEGIG GAEAVNSRNT TDCGQIGLHK AISLSDFLAV LGDSKNTIDS NQVEEEAGLN QSMSVSDLVA
401: FLSDSRNITD SSQIKVPGLQ QSISVSDFVG LLSDSAGGNH PEHLEKFEIL KQQLLSDNIQ FDTPDEKSLM PRVNSLFNLL YKEPNVAANS QLNTEVSGGF
501: KSELHDLNGT VSANNNNRVL DPASSSKPQG MLRKDSFSDL LLHLPRITSL PKFLSNISEE DGDAYNR
101: VKKESKCIAA ASAGAALAPG SIEKLKASNF PASVLKIGKW EYKSRYEGDL VAKCYFAKHK LVWEVLEQGL KSKIEIQWSD IVGLKANCPE DGPGTLTLVL
201: SRQPLFFRET NPQPRKHTLW QATSDFTDGQ ASLYRKHFLQ CAQGIMNKHF EKLVQCDHRL FHLSREPEII MDFPYFDARQ SIFEDPSESK GYPYGNLNLG
301: TGPSIASPVG AQSSSEHMYL SHEAPSPSSV IDARANEGIG GAEAVNSRNT TDCGQIGLHK AISLSDFLAV LGDSKNTIDS NQVEEEAGLN QSMSVSDLVA
401: FLSDSRNITD SSQIKVPGLQ QSISVSDFVG LLSDSAGGNH PEHLEKFEIL KQQLLSDNIQ FDTPDEKSLM PRVNSLFNLL YKEPNVAANS QLNTEVSGGF
501: KSELHDLNGT VSANNNNRVL DPASSSKPQG MLRKDSFSDL LLHLPRITSL PKFLSNISEE DGDAYNR
001: MVEMRKSGGL RPESESAARC RDELPVKLEI AEDDLEEEHG PLNKRSRLWS PGTSSSTMAP AKYNPLDEPS PLGLSLKKSP SLLELIQMKI THCGDPKAAE
101: TLKAGALGSG LKRESKTIAA AASVGPTLAP GSIEKLKASN FPASLLKIGQ WEYKSRYEGD LVAKCYFAKH KLVWEVLEQG LKSKIEIQWS DIMALKANCP
201: EDGPGTLTLV LARQPLFFRE TNPQPRKHTL WQATSDFTDG QASMNRQHFL QCAQGIMNKH FEKLVQCDHR LFHLSRQPEI AIDSPYFDAR QSIFEDPSES
301: KGHPFGNLNL STGPSISGTQ NLASPVGAQS SSEHMYLSHE APSPSSVIDA RANEGIGGSE AVNSRNRTDC GQIEAPGIHQ SMSLSDFLAV LCDTKNTTDL
401: NLADDVDGLH QSMSVSDFVA YLSDSRNITD SDQIKVPGLH QSMSVSDFVG LLSDSAGGSH PEHMEKFEIM KQQLLSDNIQ FEAPDEKSLM PRVNSLFNLL
501: YKDPNVAANS QLNTEMSVGL KSEPKGIVSD NNNNNNNNNR VLDTASSSKP QGMLRKDSFS DLLLHLPRIT SLPKFLSNIS EEDGDAYNR
101: TLKAGALGSG LKRESKTIAA AASVGPTLAP GSIEKLKASN FPASLLKIGQ WEYKSRYEGD LVAKCYFAKH KLVWEVLEQG LKSKIEIQWS DIMALKANCP
201: EDGPGTLTLV LARQPLFFRE TNPQPRKHTL WQATSDFTDG QASMNRQHFL QCAQGIMNKH FEKLVQCDHR LFHLSRQPEI AIDSPYFDAR QSIFEDPSES
301: KGHPFGNLNL STGPSISGTQ NLASPVGAQS SSEHMYLSHE APSPSSVIDA RANEGIGGSE AVNSRNRTDC GQIEAPGIHQ SMSLSDFLAV LCDTKNTTDL
401: NLADDVDGLH QSMSVSDFVA YLSDSRNITD SDQIKVPGLH QSMSVSDFVG LLSDSAGGSH PEHMEKFEIM KQQLLSDNIQ FEAPDEKSLM PRVNSLFNLL
501: YKDPNVAANS QLNTEMSVGL KSEPKGIVSD NNNNNNNNNR VLDTASSSKP QGMLRKDSFS DLLLHLPRIT SLPKFLSNIS EEDGDAYNR
Arabidopsis Description
ATP-dependent DNA helicase [Source:UniProtKB/TrEMBL;Acc:Q9SUG8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.